Gene annotation
Transcriptome id Sobic.001G301600.1
Synonym EXPB2, ATHEXPBETA1.4, ATEXPB2, Sb01g029340
Functional annotation expansin precursor, putative, expressed
UniProt C5WSG0
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40720.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051980 , Zm00025a051981 , Zm00025a032217 , Zm00025a051976 , Zm00025a051978 , Zm00025a051986 , Zm00025a003327 , Zm00025a052026 , Zm00025a052035 , Zm00025a052033 , Zm00025a003339 , Zm00025a020874
Brachypodium KQK07389 , KQJ97767 , KQJ97766 , KQJ97764 , KQJ97763 , KQJ97762 , KQJ97768
Barley HORVU1Hr1G054240.1 , HORVU1Hr1G054240.2 , HORVU0Hr1G005490.2 , HORVU4Hr1G088080.5 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.6 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU0Hr1G005490.1 , HORVU6Hr1G005760.1 , HORVU5Hr1G019100.8 , HORVU5Hr1G019100.9 , HORVU3Hr1G001920.1 , HORVU3Hr1G001920.3 , HORVU3Hr1G001920.2 , HORVU5Hr1G019100.1 , HORVU5Hr1G019100.2 , HORVU5Hr1G019100.3 , HORVU5Hr1G019100.4 , HORVU5Hr1G019100.5 , HORVU5Hr1G019100.6 , HORVU5Hr1G019100.7 , HORVU6Hr1G055090.1 , HORVU6Hr1G055090.2 , HORVU1Hr1G054210.5 , HORVU1Hr1G054210.4 , HORVU1Hr1G054210.3 , HORVU1Hr1G054210.2 , HORVU1Hr1G054210.1 , HORVU1Hr1G054250.9 , HORVU1Hr1G054250.8 , HORVU1Hr1G054250.3 , HORVU1Hr1G054250.2 , HORVU1Hr1G054250.1 , HORVU6Hr1G005810.3 , HORVU1Hr1G054250.7 , HORVU1Hr1G054250.6 , HORVU1Hr1G054250.5 , HORVU1Hr1G054250.4 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13 , HORVU3Hr1G073120.1 , HORVU3Hr1G105180.1 , HORVU3Hr1G076110.1 , HORVU6Hr1G005810.2 , HORVU6Hr1G005810.4
Wheat TraesCS1D02G215500 , TraesCS1D02G215500 , TraesCS1D02G215100 , TraesCS1D02G215100 , TraesCS1B02G226000 , TraesCS2A02G105200 , TraesCS6D02G037700 , TraesCS1A02G212200 , TraesCSU02G085500 , TraesCS3D02G000400 , TraesCS4D02G361700 , TraesCS6D02G037500 , TraesCS1B02G225700 , TraesCS1B02G225700 , TraesCS5A02G537300 , TraesCS1B02G226100 , TraesCS1B02G226100 , TraesCS1B02G226000 , TraesCS1B02G225900 , TraesCS1A02G212300 , TraesCS6A02G032700 , TraesCS6B02G046100 , TraesCS3B02G014400 , TraesCS1A02G212000 , TraesCS6B02G046200 , TraesCS2A02G458900 , TraesCS1D02G215300 , TraesCS1A02G212600 , TraesCS1B02G225800 , TraesCS6A02G217100 , TraesCS1A02G212400 , TraesCS6B02G245700 , TraesCS1D02G215400 , TraesCS4B02G375600 , TraesCS1D02G215200 , TraesCS6B02G046300 , TraesCS6B02G046000 , TraesCS2B02G122100
Populus -


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cDNA sequences
Sobic.001G301600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G344700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
2 Sobic.003G371100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@POT family protein, expressed -
3 Sobic.002G213000 - -
4 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.001G301500 expansin precursor, putative, expressed -
6 Sobic.003G237600 expressed protein -
7 Sobic.002G357000 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.001G300800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
9 Sobic.007G058200 - -
10 Sobic.003G338801 - -
11 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
12 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
13 Sobic.003G326400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G215600 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
15 Sobic.007G226200 - -
16 Sobic.001G005300 gibberellin 20 oxidase 1, putative, expressed K05282: gibberellin-44 dioxygenase
17 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
18 Sobic.001G098600 expressed protein -
19 Sobic.001G361700 expressed protein -
20 Sobic.006G090400 OsRR1 type-A response regulator, expressed K14492: two-component response regulator ARR-A family


Gene co-expression network
sample Sobic001G301600 Sobic001G301600 Sobic003G344700 Sobic003G344700 Sobic001G301600--Sobic003G344700 Sobic003G371100 Sobic003G371100 Sobic001G301600--Sobic003G371100 Sobic002G213000 Sobic002G213000 Sobic001G301600--Sobic002G213000 Sobic001G355600 Sobic001G355600 Sobic001G301600--Sobic001G355600 Sobic001G301500 Sobic001G301500 Sobic001G301600--Sobic001G301500 Sobic003G237600 Sobic003G237600 Sobic001G301600--Sobic003G237600 Sobic002G357000 Sobic002G357000 Sobic001G301600--Sobic002G357000 Sobic001G300800 Sobic001G300800 Sobic001G301600--Sobic001G300800 Sobic007G058200 Sobic007G058200 Sobic001G301600--Sobic007G058200 Sobic003G344700--Sobic002G213000 Sobic003G344700--Sobic001G301600 Sobic001G098600 Sobic001G098600 Sobic003G344700--Sobic001G098600 Sobic003G344700--Sobic003G371100 Sobic003G344700--Sobic001G355600 Sobic004G035700 Sobic004G035700 Sobic003G344700--Sobic004G035700 Sobic007G226200 Sobic007G226200 Sobic003G344700--Sobic007G226200 Sobic001G338500 Sobic001G338500 Sobic003G344700--Sobic001G338500 Sobic001G297400 Sobic001G297400 Sobic003G344700--Sobic001G297400 Sobic003G371100--Sobic001G355600 Sobic003G371100--Sobic007G226200 Sobic003G371100--Sobic002G213000 Sobic001G189100 Sobic001G189100 Sobic003G371100--Sobic001G189100 Sobic003G371100--Sobic003G237600 Sobic003G326400 Sobic003G326400 Sobic003G371100--Sobic003G326400 Sobic009G222200 Sobic009G222200 Sobic003G371100--Sobic009G222200 Sobic003G371100--Sobic003G344700 Sobic002G213000--Sobic004G035700 Sobic010G183100 Sobic010G183100 Sobic002G213000--Sobic010G183100 Sobic001G068400 Sobic001G068400 Sobic002G213000--Sobic001G068400 Sobic002G213000--Sobic001G297400 Sobic009G254600 Sobic009G254600 Sobic002G213000--Sobic009G254600 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic002G213000--Sobic008G081200 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic001G355600--Sobic009G222200 Sobic001G355600--Sobic003G371100 Sobic003G036100 Sobic003G036100 Sobic001G355600--Sobic003G036100 Sobic001G355600--Sobic010G183100 Sobic008G106200 Sobic008G106200 Sobic001G355600--Sobic008G106200 Sobic001G355600--Sobic009G254600 Sobic001G301500--Sobic001G301600 Sobic005G222800 Sobic005G222800 Sobic001G301500--Sobic005G222800 Sobic003G069100 Sobic003G069100 Sobic001G301500--Sobic003G069100 Sobic001G301500--Sobic001G300800 Sobic003G404900 Sobic003G404900 Sobic001G301500--Sobic003G404900 Sobic001G301500--Sobic001G355600 Sobic008G105850 Sobic008G105850 Sobic001G301500--Sobic008G105850 Sobic001G215600 Sobic001G215600 Sobic001G301500--Sobic001G215600 Sobic001G208100 Sobic001G208100 Sobic001G301500--Sobic001G208100 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic003G237600--Sobic008G106200 Sobic003G338801 Sobic003G338801 Sobic002G357000--Sobic003G338801 Sobic010G094301 Sobic010G094301 Sobic002G357000--Sobic010G094301 Sobic001G464700 Sobic001G464700 Sobic002G357000--Sobic001G464700 Sobic002G264800 Sobic002G264800 Sobic002G357000--Sobic002G264800 Sobic002G357000--Sobic001G301600 Sobic001G192100 Sobic001G192100 Sobic002G357000--Sobic001G192100 Sobic002G357000--Sobic003G069100 Sobic002G357000--Sobic001G215600 Sobic003G099400 Sobic003G099400 Sobic002G357000--Sobic003G099400 Sobic004G095000 Sobic004G095000 Sobic001G300800--Sobic004G095000 Sobic010G093500 Sobic010G093500 Sobic001G300800--Sobic010G093500 Sobic001G300800--Sobic003G338801 Sobic001G300800--Sobic010G094301 Sobic001G300800--Sobic003G069100 Sobic001G300800--Sobic001G301600 Sobic001G361700 Sobic001G361700 Sobic001G300800--Sobic001G361700 Sobic001G262301 Sobic001G262301 Sobic001G300800--Sobic001G262301 Sobic001G300800--Sobic002G213000 Sobic007G058200--Sobic001G297400 Sobic007G058200--Sobic001G098600 Sobic007G058200--Sobic003G237600 Sobic005G037300 Sobic005G037300 Sobic007G058200--Sobic005G037300 Sobic007G058200--Sobic009G254600 Sobic007G058200--Sobic004G035700 Sobic007G058200--Sobic001G068400 Sobic007G058200--Sobic001G189100
Octagon: transcription factors


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