Gene annotation
Transcriptome id Sobic.001G005300.1
Synonym Sb01g000580, AT2353, GA20OX2, ATGA20OX2
Functional annotation gibberellin 20 oxidase 1, putative, expressed
UniProt Q9M4W9 , C5WRX6
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF140
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K05282; gibberellin-44 dioxygenase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G51810 : gibberellin 20 oxidase 2
RAP-DB (Rice) LOC_Os03g63970.1 : gibberellin 20 oxidase 1, putative, expressed
MaizeGDB (Corn) Zm00025a009112 , Zm00025a026549 , Zm00025a039492 , Zm00025a040653
Brachypodium KQK20711 , KQK20710 , KQK12006
Barley HORVU4Hr1G089480.1 , HORVU7Hr1G060070.10 , HORVU7Hr1G060070.11 , HORVU7Hr1G060070.12 , HORVU7Hr1G060070.13 , HORVU5Hr1G124120.5 , HORVU5Hr1G124120.4 , HORVU5Hr1G124120.1 , HORVU5Hr1G124120.3 , HORVU5Hr1G124120.2 , HORVU3Hr1G089980.2 , HORVU3Hr1G089980.1 , HORVU7Hr1G060070.6 , HORVU7Hr1G060070.7 , HORVU7Hr1G060070.5 , HORVU7Hr1G060070.3 , HORVU7Hr1G060070.1 , HORVU7Hr1G060070.8 , HORVU7Hr1G060070.9
Wheat TraesCS3D02G393900 , TraesCS7D02G279500 , TraesCS3D02G401400 , TraesCS6A02G033300 , TraesCS4A02G319100 , TraesCS5B02G560300 , TraesCS5D02G566200 , TraesCS7B02G180300 , TraesCS3A02G399800 , TraesCS3A02G406200 , TraesCS7A02G280900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G344700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
2 Sobic.001G301600 expansin precursor, putative, expressed -
3 Sobic.001G361700 expressed protein -
4 Sobic.002G213000 - -
5 Sobic.001G098600 expressed protein -
6 Sobic.006G263300 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@OsRR6 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
7 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.002G201500 GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
9 Sobic.010G183032 - -
10 Sobic.001G297400 histone H3, putative, expressed K11253: histone H3
11 Sobic.010G108401 - -
12 Sobic.010G231800 ribosomal protein, putative, expressed -
13 Sobic.007G058200 - -
14 Sobic.003G371100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@POT family protein, expressed -
15 Sobic.004G035700 - -
16 Sobic.001G338500 ACT domain containing protein, expressed -
17 Sobic.004G040050 - -
18 Sobic.001G068400 - -
19 Sobic.004G081601 - -
20 Sobic.009G216600 - -


Gene co-expression network
sample Sobic001G005300 Sobic001G005300 Sobic003G344700 Sobic003G344700 Sobic001G005300--Sobic003G344700 Sobic001G301600 Sobic001G301600 Sobic001G005300--Sobic001G301600 Sobic001G361700 Sobic001G361700 Sobic001G005300--Sobic001G361700 Sobic002G213000 Sobic002G213000 Sobic001G005300--Sobic002G213000 Sobic001G098600 Sobic001G098600 Sobic001G005300--Sobic001G098600 Sobic006G263300 Sobic006G263300 Sobic001G005300--Sobic006G263300 Sobic001G355600 Sobic001G355600 Sobic001G005300--Sobic001G355600 Sobic002G201500 Sobic002G201500 Sobic001G005300--Sobic002G201500 Sobic010G183032 Sobic010G183032 Sobic001G005300--Sobic010G183032 Sobic003G344700--Sobic002G213000 Sobic003G344700--Sobic001G301600 Sobic003G344700--Sobic001G098600 Sobic003G371100 Sobic003G371100 Sobic003G344700--Sobic003G371100 Sobic003G344700--Sobic001G355600 Sobic004G035700 Sobic004G035700 Sobic003G344700--Sobic004G035700 Sobic007G226200 Sobic007G226200 Sobic003G344700--Sobic007G226200 Sobic001G338500 Sobic001G338500 Sobic003G344700--Sobic001G338500 Sobic001G297400 Sobic001G297400 Sobic003G344700--Sobic001G297400 Sobic001G301600--Sobic003G344700 Sobic001G301600--Sobic003G371100 Sobic001G301600--Sobic002G213000 Sobic001G301600--Sobic001G355600 Sobic001G301500 Sobic001G301500 Sobic001G301600--Sobic001G301500 Sobic003G237600 Sobic003G237600 Sobic001G301600--Sobic003G237600 Sobic002G357000 Sobic002G357000 Sobic001G301600--Sobic002G357000 Sobic001G300800 Sobic001G300800 Sobic001G301600--Sobic001G300800 Sobic007G058200 Sobic007G058200 Sobic001G301600--Sobic007G058200 Sobic004G026700 Sobic004G026700 Sobic001G361700--Sobic004G026700 Sobic002G000500 Sobic002G000500 Sobic001G361700--Sobic002G000500 Sobic001G068400 Sobic001G068400 Sobic001G361700--Sobic001G068400 Sobic001G361700--Sobic010G183032 Sobic002G040100 Sobic002G040100 Sobic001G361700--Sobic002G040100 Sobic010G108401 Sobic010G108401 Sobic001G361700--Sobic010G108401 Sobic010G183100 Sobic010G183100 Sobic001G361700--Sobic010G183100 Sobic006G011100 Sobic006G011100 Sobic001G361700--Sobic006G011100 Sobic010G038500 Sobic010G038500 Sobic001G361700--Sobic010G038500 Sobic002G213000--Sobic004G035700 Sobic002G213000--Sobic010G183100 Sobic002G213000--Sobic001G068400 Sobic002G213000--Sobic001G297400 Sobic009G254600 Sobic009G254600 Sobic002G213000--Sobic009G254600 Sobic001G189100 Sobic001G189100 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic002G213000--Sobic008G081200 Sobic001G098600--Sobic010G038500 Sobic001G098600--Sobic004G035700 Sobic001G344600 Sobic001G344600 Sobic001G098600--Sobic001G344600 Sobic005G065500 Sobic005G065500 Sobic001G098600--Sobic005G065500 Sobic005G217900 Sobic005G217900 Sobic001G098600--Sobic005G217900 Sobic001G098600--Sobic001G068400 Sobic001G098600--Sobic009G254600 Sobic001G098600--Sobic010G183100 Sobic001G098600--Sobic001G361700 Sobic006G263300--Sobic003G344700 Sobic006G263300--Sobic001G355600 Sobic001G447400 Sobic001G447400 Sobic006G263300--Sobic001G447400 Sobic006G263300--Sobic001G098600 Sobic004G162000 Sobic004G162000 Sobic006G263300--Sobic004G162000 Sobic006G263300--Sobic001G005300 Sobic006G263300--Sobic001G297400 Sobic008G106200 Sobic008G106200 Sobic006G263300--Sobic008G106200 Sobic009G015700 Sobic009G015700 Sobic006G263300--Sobic009G015700 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic009G222200 Sobic009G222200 Sobic001G355600--Sobic009G222200 Sobic001G355600--Sobic003G371100 Sobic003G036100 Sobic003G036100 Sobic001G355600--Sobic003G036100 Sobic001G355600--Sobic010G183100 Sobic001G355600--Sobic008G106200 Sobic001G355600--Sobic009G254600 Sobic001G138800 Sobic001G138800 Sobic002G201500--Sobic001G138800 Sobic009G102100 Sobic009G102100 Sobic002G201500--Sobic009G102100 Sobic003G382100 Sobic003G382100 Sobic002G201500--Sobic003G382100 Sobic004G047400 Sobic004G047400 Sobic002G201500--Sobic004G047400 Sobic009G128800 Sobic009G128800 Sobic002G201500--Sobic009G128800 Sobic009G185501 Sobic009G185501 Sobic002G201500--Sobic009G185501 Sobic010G078300 Sobic010G078300 Sobic002G201500--Sobic010G078300 Sobic001G419801 Sobic001G419801 Sobic002G201500--Sobic001G419801 Sobic002G201500--Sobic001G005300 Sobic010G183032--Sobic010G108401 Sobic008G038300 Sobic008G038300 Sobic010G183032--Sobic008G038300 Sobic010G183032--Sobic004G035700 Sobic001G274600 Sobic001G274600 Sobic010G183032--Sobic001G274600 Sobic010G183032--Sobic002G040100 Sobic010G183032--Sobic001G297400 Sobic010G183032--Sobic001G068400 Sobic010G183032--Sobic010G183100 Sobic010G183032--Sobic002G000500
Octagon: transcription factors


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