Gene annotation
Transcriptome id Sobic.006G263300.1
Synonym Sb06g032600, ARR6, Type-A response regulator 6, ARR6
Functional annotation Decreased expression in phyB-1 mutant (PubMedID : 26893475)
OsRR6 type-A response regulator, expressed
UniProt C5YA64
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF566
NCBI CDD -
KEGG Orthology K14492; two-component response regulator ARR-A family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT5G62920 : response regulator 6
RAP-DB (Rice) LOC_Os04g57720.1 : OsRR6 type-A response regulator, expressed
MaizeGDB (Corn) Zm00025a021063 , Zm00025a029544 , Zm00025a057361 , Zm00025a009346
Brachypodium KQJ85250 , PNT61245 , KQK16433
Barley HORVU6Hr1G094470.12 , HORVU6Hr1G094470.15 , HORVU2Hr1G120490.2 , HORVU2Hr1G120490.1
Wheat TraesCS2D02G552200 , TraesCS2B02G582300 , TraesCS6D02G401600 , TraesCS6A02G416400 , TraesCS2A02G551100
Populus -


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cDNA sequences
Sobic.006G263300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G344700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
2 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.001G447400 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
4 Sobic.001G098600 expressed protein -
5 Sobic.004G162000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
6 Sobic.001G005300 gibberellin 20 oxidase 1, putative, expressed K05282: gibberellin-44 dioxygenase
7 Sobic.001G297400 histone H3, putative, expressed K11253: histone H3
8 Sobic.008G106200 cytochrome P450, putative, expressed -
9 Sobic.009G015700 actin-depolymerizing factor, putative, expressed K05765: cofilin
10 Sobic.002G340700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@secretory carrier-associated membrane protein, putative, expressed -
11 Sobic.007G052700 acyl CoA binding protein, putative, expressed K08762: DBI, diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein)
12 Sobic.001G300800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
13 Sobic.009G220933 - -
14 Sobic.010G102050 - -
15 Sobic.007G216300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
16 Sobic.006G100600 histone H3, putative, expressed K11253: histone H3
17 Sobic.002G213000 - -
18 Sobic.002G222700 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
19 Sobic.007G058200 - -
20 Sobic.001G301600 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G263300 Sobic006G263300 Sobic003G344700 Sobic003G344700 Sobic006G263300--Sobic003G344700 Sobic001G355600 Sobic001G355600 Sobic006G263300--Sobic001G355600 Sobic001G447400 Sobic001G447400 Sobic006G263300--Sobic001G447400 Sobic001G098600 Sobic001G098600 Sobic006G263300--Sobic001G098600 Sobic004G162000 Sobic004G162000 Sobic006G263300--Sobic004G162000 Sobic001G005300 Sobic001G005300 Sobic006G263300--Sobic001G005300 Sobic001G297400 Sobic001G297400 Sobic006G263300--Sobic001G297400 Sobic008G106200 Sobic008G106200 Sobic006G263300--Sobic008G106200 Sobic009G015700 Sobic009G015700 Sobic006G263300--Sobic009G015700 Sobic002G213000 Sobic002G213000 Sobic003G344700--Sobic002G213000 Sobic001G301600 Sobic001G301600 Sobic003G344700--Sobic001G301600 Sobic003G344700--Sobic001G098600 Sobic003G371100 Sobic003G371100 Sobic003G344700--Sobic003G371100 Sobic003G344700--Sobic001G355600 Sobic004G035700 Sobic004G035700 Sobic003G344700--Sobic004G035700 Sobic007G226200 Sobic007G226200 Sobic003G344700--Sobic007G226200 Sobic001G338500 Sobic001G338500 Sobic003G344700--Sobic001G338500 Sobic003G344700--Sobic001G297400 Sobic001G189100 Sobic001G189100 Sobic001G355600--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic001G355600--Sobic003G237600 Sobic009G222200 Sobic009G222200 Sobic001G355600--Sobic009G222200 Sobic001G355600--Sobic003G371100 Sobic003G036100 Sobic003G036100 Sobic001G355600--Sobic003G036100 Sobic010G183100 Sobic010G183100 Sobic001G355600--Sobic010G183100 Sobic001G355600--Sobic008G106200 Sobic009G254600 Sobic009G254600 Sobic001G355600--Sobic009G254600 Sobic001G095300 Sobic001G095300 Sobic001G447400--Sobic001G095300 Sobic010G204600 Sobic010G204600 Sobic001G447400--Sobic010G204600 Sobic008G161000 Sobic008G161000 Sobic001G447400--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic001G447400--Sobic001G037000 Sobic003G249800 Sobic003G249800 Sobic001G447400--Sobic003G249800 Sobic003G331600 Sobic003G331600 Sobic001G447400--Sobic003G331600 Sobic009G129000 Sobic009G129000 Sobic001G447400--Sobic009G129000 Sobic003G181500 Sobic003G181500 Sobic001G447400--Sobic003G181500 Sobic001G335400 Sobic001G335400 Sobic001G447400--Sobic001G335400 Sobic010G038500 Sobic010G038500 Sobic001G098600--Sobic010G038500 Sobic001G098600--Sobic004G035700 Sobic001G344600 Sobic001G344600 Sobic001G098600--Sobic001G344600 Sobic005G065500 Sobic005G065500 Sobic001G098600--Sobic005G065500 Sobic005G217900 Sobic005G217900 Sobic001G098600--Sobic005G217900 Sobic001G068400 Sobic001G068400 Sobic001G098600--Sobic001G068400 Sobic001G098600--Sobic009G254600 Sobic001G098600--Sobic010G183100 Sobic001G361700 Sobic001G361700 Sobic001G098600--Sobic001G361700 Sobic002G078300 Sobic002G078300 Sobic004G162000--Sobic002G078300 Sobic001G095632 Sobic001G095632 Sobic004G162000--Sobic001G095632 Sobic003G305100 Sobic003G305100 Sobic004G162000--Sobic003G305100 Sobic002G263100 Sobic002G263100 Sobic004G162000--Sobic002G263100 Sobic005G194900 Sobic005G194900 Sobic004G162000--Sobic005G194900 Sobic002G309700 Sobic002G309700 Sobic004G162000--Sobic002G309700 Sobic005G168100 Sobic005G168100 Sobic004G162000--Sobic005G168100 Sobic001G087900 Sobic001G087900 Sobic004G162000--Sobic001G087900 Sobic002G431100 Sobic002G431100 Sobic004G162000--Sobic002G431100 Sobic001G005300--Sobic003G344700 Sobic001G005300--Sobic001G301600 Sobic001G005300--Sobic001G361700 Sobic001G005300--Sobic002G213000 Sobic001G005300--Sobic001G098600 Sobic001G005300--Sobic006G263300 Sobic001G005300--Sobic001G355600 Sobic002G201500 Sobic002G201500 Sobic001G005300--Sobic002G201500 Sobic010G183032 Sobic010G183032 Sobic001G005300--Sobic010G183032 Sobic001G297400--Sobic010G183032 Sobic010G108401 Sobic010G108401 Sobic001G297400--Sobic010G108401 Sobic001G297400--Sobic004G035700 Sobic001G297400--Sobic010G183100 Sobic001G297400--Sobic001G068400 Sobic002G040100 Sobic002G040100 Sobic001G297400--Sobic002G040100 Sobic001G297400--Sobic002G213000 Sobic001G297400--Sobic010G038500 Sobic001G297400--Sobic009G254600 Sobic008G106200--Sobic001G189100 Sobic008G106200--Sobic003G237600 Sobic008G106200--Sobic009G254600 Sobic008G106200--Sobic001G355600 Sobic008G106200--Sobic003G036100 Sobic008G106200--Sobic004G035700 Sobic008G106200--Sobic010G183100 Sobic008G106200--Sobic001G068400 Sobic009G017800 Sobic009G017800 Sobic009G015700--Sobic009G017800 Sobic007G122200 Sobic007G122200 Sobic009G015700--Sobic007G122200 Sobic003G402600 Sobic003G402600 Sobic009G015700--Sobic003G402600 Sobic001G407600 Sobic001G407600 Sobic009G015700--Sobic001G407600 Sobic001G526600 Sobic001G526600 Sobic009G015700--Sobic001G526600 Sobic005G026100 Sobic005G026100 Sobic009G015700--Sobic005G026100 Sobic003G238000 Sobic003G238000 Sobic009G015700--Sobic003G238000 Sobic002G291200 Sobic002G291200 Sobic009G015700--Sobic002G291200 Sobic002G363100 Sobic002G363100 Sobic009G015700--Sobic002G363100
Octagon: transcription factors


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