Gene annotation
Transcriptome id Sobic.006G100600.2,Sobic.006G100600.1
Synonym Sb06g018420
Functional annotation histone H3, putative, expressed
UniProt C5WXQ0
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT4G40030 : Histone superfamily protein
RAP-DB (Rice) LOC_Os06g04030.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a020776 , Zm00025a011166 , Zm00025a002729
Brachypodium KQJ82897
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU7Hr1G012820.1 , HORVU7Hr1G012820.2 , HORVU7Hr1G012820.3 , HORVU7Hr1G012820.4 , HORVU7Hr1G012820.5 , HORVU7Hr1G012820.6 , HORVU2Hr1G090210.1 , HORVU2Hr1G090210.2 , HORVU2Hr1G090210.3 , HORVU7Hr1G025200.2 , HORVU7Hr1G025200.3 , HORVU7Hr1G025200.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.1 , HORVU2Hr1G079560.7 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4
Wheat TraesCS7A02G067800 , TraesCS7D02G061900 , TraesCS2D02G316700 , TraesCS4A02G423800 , TraesCSU02G092100 , TraesCS3D02G103500 , TraesCS2B02G337200 , TraesCS7D02G061500 , TraesCS2A02G318900 , TraesCS1A02G421300 , TraesCS4A02G421900 , TraesCS6A02G038500 , TraesCS5B02G467200 , TraesCS5A02G458300 , TraesCS4A02G421500
Populus PNT35366 , PNT35365 , PNT35364 , PNT35363 , PNT35361 , PNT28035 , PNT28037 , PNT28036


JBrowse

Open New Page


cDNA sequences
Sobic.006G100600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
2 Sobic.004G236300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@shikimate kinase, putative, expressed K00891: aroK, shikimate kinase
3 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
4 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
5 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
6 Sobic.002G255200 BHLH transcription factor, putative, expressed -
7 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
8 Sobic.003G386100 selenoprotein precursor, putative, expressed -
9 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
10 Sobic.010G114700 heat shock factor-binding protein 1, putative, expressed -
11 Sobic.010G267900 expressed protein -
12 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
13 Sobic.001G353600 expressed protein -
14 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
16 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
17 Sobic.003G073900 expressed protein -
18 Sobic.003G254800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
19 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
20 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -


Gene co-expression network
sample Sobic006G100600 Sobic006G100600 Sobic008G073300 Sobic008G073300 Sobic006G100600--Sobic008G073300 Sobic004G236300 Sobic004G236300 Sobic006G100600--Sobic004G236300 Sobic004G130100 Sobic004G130100 Sobic006G100600--Sobic004G130100 Sobic002G371100 Sobic002G371100 Sobic006G100600--Sobic002G371100 Sobic003G440800 Sobic003G440800 Sobic006G100600--Sobic003G440800 Sobic002G255200 Sobic002G255200 Sobic006G100600--Sobic002G255200 Sobic001G128400 Sobic001G128400 Sobic006G100600--Sobic001G128400 Sobic003G386100 Sobic003G386100 Sobic006G100600--Sobic003G386100 Sobic006G232200 Sobic006G232200 Sobic006G100600--Sobic006G232200 Sobic004G066800 Sobic004G066800 Sobic008G073300--Sobic004G066800 Sobic007G045600 Sobic007G045600 Sobic008G073300--Sobic007G045600 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic008G073300--Sobic003G386100 Sobic001G025600 Sobic001G025600 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic004G236300--Sobic006G100600 Sobic004G236300--Sobic004G130100 Sobic004G236300--Sobic002G255200 Sobic002G355300 Sobic002G355300 Sobic004G236300--Sobic002G355300 Sobic003G337000 Sobic003G337000 Sobic004G236300--Sobic003G337000 Sobic004G236300--Sobic006G232200 Sobic004G055200 Sobic004G055200 Sobic004G236300--Sobic004G055200 Sobic004G136600 Sobic004G136600 Sobic004G236300--Sobic004G136600 Sobic001G388600 Sobic001G388600 Sobic004G236300--Sobic001G388600 Sobic009G217900 Sobic009G217900 Sobic004G130100--Sobic009G217900 Sobic004G130100--Sobic006G232200 Sobic001G501200 Sobic001G501200 Sobic004G130100--Sobic001G501200 Sobic004G130100--Sobic003G337000 Sobic002G363100 Sobic002G363100 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic001G018800 Sobic001G018800 Sobic002G371100--Sobic001G018800 Sobic002G371100--Sobic008G073300 Sobic002G371100--Sobic001G025600 Sobic002G255100 Sobic002G255100 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic004G002350 Sobic004G002350 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic003G440800--Sobic001G428100 Sobic001G314500 Sobic001G314500 Sobic003G440800--Sobic001G314500 Sobic009G004600 Sobic009G004600 Sobic003G440800--Sobic009G004600 Sobic003G440800--Sobic004G130100 Sobic010G205300 Sobic010G205300 Sobic003G440800--Sobic010G205300 Sobic003G440800--Sobic003G386100 Sobic003G440800--Sobic009G198500 Sobic003G440800--Sobic001G501200 Sobic005G033200 Sobic005G033200 Sobic003G440800--Sobic005G033200 Sobic004G075000 Sobic004G075000 Sobic002G255200--Sobic004G075000 Sobic007G051000 Sobic007G051000 Sobic002G255200--Sobic007G051000 Sobic003G393700 Sobic003G393700 Sobic002G255200--Sobic003G393700 Sobic009G077800 Sobic009G077800 Sobic002G255200--Sobic009G077800 Sobic001G119400 Sobic001G119400 Sobic002G255200--Sobic001G119400 Sobic003G211200 Sobic003G211200 Sobic002G255200--Sobic003G211200 Sobic002G187500 Sobic002G187500 Sobic002G255200--Sobic002G187500 Sobic003G072300 Sobic003G072300 Sobic002G255200--Sobic003G072300 Sobic009G176000 Sobic009G176000 Sobic002G255200--Sobic009G176000 Sobic005G111100 Sobic005G111100 Sobic001G128400--Sobic005G111100 Sobic003G129800 Sobic003G129800 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic003G386100--Sobic004G066800 Sobic003G386100--Sobic009G198500 Sobic003G386100--Sobic003G124800 Sobic003G386100--Sobic001G025600 Sobic003G386100--Sobic006G232200 Sobic003G386100--Sobic008G073300 Sobic002G078400 Sobic002G078400 Sobic003G386100--Sobic002G078400 Sobic003G386100--Sobic007G045600 Sobic004G300900 Sobic004G300900 Sobic003G386100--Sobic004G300900 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.