Gene annotation
Transcriptome id Sobic.004G236300.2,Sobic.004G236300.1
Synonym ATSK1, Sb04g027880, SK1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
shikimate kinase, putative, expressed
UniProt A0A194YR98 , A0A194YSF0
Pfam PF13238
Panther DB PTHR21087 PTHR21087:SF8
NCBI CDD -
KEGG Orthology K00891; aroK, shikimate kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21940 : shikimate kinase 1
RAP-DB (Rice) LOC_Os02g51410.1 : shikimate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a022101 , Zm00025a033189
Brachypodium KQK01923 , KQK01922
Barley HORVU6Hr1G075420.8 , HORVU6Hr1G075420.9 , HORVU6Hr1G075420.6 , HORVU6Hr1G075420.7 , HORVU6Hr1G075420.4 , HORVU6Hr1G075420.5 , HORVU6Hr1G075420.2 , HORVU6Hr1G075420.3 , HORVU6Hr1G075420.1 , HORVU6Hr1G075420.10
Wheat TraesCS6A02G305400 , TraesCS6B02G333600 , TraesCS6D02G284500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G236300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G100600 histone H3, putative, expressed K11253: histone H3
2 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
3 Sobic.002G255200 BHLH transcription factor, putative, expressed -
4 Sobic.002G355300 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
6 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
7 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
8 Sobic.004G136600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
9 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
10 Sobic.007G052700 acyl CoA binding protein, putative, expressed K08762: DBI, diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein)
11 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
12 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
13 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
14 Sobic.001G353600 expressed protein -
15 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
16 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
17 Sobic.002G066400 OsFBDUF18 - F-box and DUF domain containing protein, expressed -
18 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
19 Sobic.007G194700 phosphoribulokinase/Uridine kinase family protein, expressed K00876: udk, uridine kinase
20 Sobic.001G048832 - -


Gene co-expression network
sample Sobic004G236300 Sobic004G236300 Sobic006G100600 Sobic006G100600 Sobic004G236300--Sobic006G100600 Sobic004G130100 Sobic004G130100 Sobic004G236300--Sobic004G130100 Sobic002G255200 Sobic002G255200 Sobic004G236300--Sobic002G255200 Sobic002G355300 Sobic002G355300 Sobic004G236300--Sobic002G355300 Sobic003G337000 Sobic003G337000 Sobic004G236300--Sobic003G337000 Sobic006G232200 Sobic006G232200 Sobic004G236300--Sobic006G232200 Sobic004G055200 Sobic004G055200 Sobic004G236300--Sobic004G055200 Sobic004G136600 Sobic004G136600 Sobic004G236300--Sobic004G136600 Sobic001G388600 Sobic001G388600 Sobic004G236300--Sobic001G388600 Sobic008G073300 Sobic008G073300 Sobic006G100600--Sobic008G073300 Sobic006G100600--Sobic004G236300 Sobic006G100600--Sobic004G130100 Sobic002G371100 Sobic002G371100 Sobic006G100600--Sobic002G371100 Sobic003G440800 Sobic003G440800 Sobic006G100600--Sobic003G440800 Sobic006G100600--Sobic002G255200 Sobic001G128400 Sobic001G128400 Sobic006G100600--Sobic001G128400 Sobic003G386100 Sobic003G386100 Sobic006G100600--Sobic003G386100 Sobic006G100600--Sobic006G232200 Sobic009G217900 Sobic009G217900 Sobic004G130100--Sobic009G217900 Sobic004G130100--Sobic006G232200 Sobic001G501200 Sobic001G501200 Sobic004G130100--Sobic001G501200 Sobic004G130100--Sobic003G337000 Sobic002G363100 Sobic002G363100 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic004G075000 Sobic004G075000 Sobic002G255200--Sobic004G075000 Sobic007G051000 Sobic007G051000 Sobic002G255200--Sobic007G051000 Sobic003G393700 Sobic003G393700 Sobic002G255200--Sobic003G393700 Sobic009G077800 Sobic009G077800 Sobic002G255200--Sobic009G077800 Sobic001G119400 Sobic001G119400 Sobic002G255200--Sobic001G119400 Sobic003G211200 Sobic003G211200 Sobic002G255200--Sobic003G211200 Sobic002G187500 Sobic002G187500 Sobic002G255200--Sobic002G187500 Sobic003G072300 Sobic003G072300 Sobic002G255200--Sobic003G072300 Sobic009G176000 Sobic009G176000 Sobic002G255200--Sobic009G176000 Sobic003G386000 Sobic003G386000 Sobic002G355300--Sobic003G386000 Sobic001G040800 Sobic001G040800 Sobic002G355300--Sobic001G040800 Sobic002G355300--Sobic004G055200 Sobic002G355300--Sobic006G232200 Sobic003G155400 Sobic003G155400 Sobic002G355300--Sobic003G155400 Sobic002G222900 Sobic002G222900 Sobic002G355300--Sobic002G222900 Sobic001G459200 Sobic001G459200 Sobic002G355300--Sobic001G459200 Sobic007G019100 Sobic007G019100 Sobic002G355300--Sobic007G019100 Sobic004G170400 Sobic004G170400 Sobic002G355300--Sobic004G170400 Sobic009G174900 Sobic009G174900 Sobic003G337000--Sobic009G174900 Sobic001G415500 Sobic001G415500 Sobic003G337000--Sobic001G415500 Sobic001G054200 Sobic001G054200 Sobic003G337000--Sobic001G054200 Sobic003G337000--Sobic006G232200 Sobic008G161800 Sobic008G161800 Sobic003G337000--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic003G337000--Sobic004G248800 Sobic003G253000 Sobic003G253000 Sobic003G337000--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic003G337000--Sobic009G185800 Sobic009G135600 Sobic009G135600 Sobic003G337000--Sobic009G135600 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic006G232200--Sobic001G054200 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic008G033600 Sobic008G033600 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic003G130800 Sobic003G130800 Sobic004G055200--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G055200--Sobic004G330700 Sobic001G281400 Sobic001G281400 Sobic004G055200--Sobic001G281400 Sobic004G187900 Sobic004G187900 Sobic004G055200--Sobic004G187900 Sobic001G499300 Sobic001G499300 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic004G055200--Sobic007G051000 Sobic004G136600--Sobic004G236300 Sobic003G243600 Sobic003G243600 Sobic004G136600--Sobic003G243600 Sobic001G302200 Sobic001G302200 Sobic004G136600--Sobic001G302200 Sobic004G136600--Sobic003G130800 Sobic006G180200 Sobic006G180200 Sobic004G136600--Sobic006G180200 Sobic002G245400 Sobic002G245400 Sobic004G136600--Sobic002G245400 Sobic004G136600--Sobic003G337000 Sobic002G066400 Sobic002G066400 Sobic004G136600--Sobic002G066400 Sobic004G136600--Sobic002G355300 Sobic001G478000 Sobic001G478000 Sobic001G388600--Sobic001G478000 Sobic001G388600--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic001G388600--Sobic004G327300 Sobic001G388600--Sobic002G363100 Sobic001G388600--Sobic002G371100 Sobic001G005900 Sobic001G005900 Sobic001G388600--Sobic001G005900 Sobic004G099900 Sobic004G099900 Sobic001G388600--Sobic004G099900 Sobic007G152400 Sobic007G152400 Sobic001G388600--Sobic007G152400 Sobic003G216500 Sobic003G216500 Sobic001G388600--Sobic003G216500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.