Gene annotation
Transcriptome id Sobic.004G055200.2,Sobic.004G055200.1
Synonym Sb04g004690, PGK
Functional annotation phosphoglycerate kinase protein, putative, expressed
UniProt A0A194YMV2
Pfam PF00162
Panther DB PTHR11406 PTHR11406:SF9
NCBI CDD -
KEGG Orthology K00927; PGK, phosphoglycerate kinase
Gene Ontology GO:0006096; glycolytic process GO:0004618phosphoglycerate kinase activity


Orthologs (automatic annotation)
TAIR AT1G79550 : phosphoglycerate kinase
RAP-DB (Rice) LOC_Os02g07260.1 : phosphoglycerate kinase protein, putative, expressed
MaizeGDB (Corn) Zm00025a027193 , Zm00025a019076
Brachypodium KQJ93534 , KQJ93535
Barley HORVU6Hr1G031830.1 , HORVU6Hr1G031830.3 , HORVU6Hr1G031830.2 , HORVU6Hr1G031830.5 , HORVU6Hr1G031830.4 , HORVU6Hr1G031830.6 , HORVU4Hr1G055460.14 , HORVU4Hr1G055460.10 , HORVU4Hr1G055460.11 , HORVU4Hr1G055460.12 , HORVU4Hr1G055460.13 , HORVU4Hr1G055460.4 , HORVU4Hr1G055460.5 , HORVU4Hr1G055460.2 , HORVU4Hr1G055460.8 , HORVU4Hr1G055460.6 , HORVU4Hr1G055460.7 , HORVU4Hr1G055460.3 , HORVU7Hr1G108230.3 , HORVU7Hr1G108230.7 , HORVU7Hr1G108230.6 , HORVU7Hr1G108230.9 , HORVU7Hr1G108230.8 , HORVU4Hr1G055460.1 , HORVU7Hr1G108230.11 , HORVU7Hr1G108230.10 , HORVU7Hr1G108230.12
Wheat TraesCS7D02G460700 , TraesCS1B02G104200 , TraesCS6A02G158300 , TraesCS6D02G148700 , TraesCS6D02G148700 , TraesCS7D02G460700 , TraesCS6B02G187500 , TraesCS6B02G187500 , TraesCS7D02G460800 , TraesCS7B02G375300
Populus PNT17055 , PNT17054 , PNT17056


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cDNA sequences
Sobic.004G055200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
2 Sobic.001G459200 MYB family transcription factor, putative, expressed -
3 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
5 Sobic.001G281400 expressed protein -
6 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
7 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
8 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
9 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
10 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
11 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
13 Sobic.003G136000 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
14 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
15 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
17 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
18 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
19 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
20 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G055200 Sobic004G055200 Sobic008G033600 Sobic008G033600 Sobic004G055200--Sobic008G033600 Sobic001G459200 Sobic001G459200 Sobic004G055200--Sobic001G459200 Sobic003G130800 Sobic003G130800 Sobic004G055200--Sobic003G130800 Sobic004G330700 Sobic004G330700 Sobic004G055200--Sobic004G330700 Sobic001G281400 Sobic001G281400 Sobic004G055200--Sobic001G281400 Sobic004G187900 Sobic004G187900 Sobic004G055200--Sobic004G187900 Sobic001G499300 Sobic001G499300 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic008G033600--Sobic004G055200 Sobic006G173900 Sobic006G173900 Sobic008G033600--Sobic006G173900 Sobic008G033600--Sobic004G187900 Sobic008G033600--Sobic001G281400 Sobic002G267500 Sobic002G267500 Sobic008G033600--Sobic002G267500 Sobic003G377900 Sobic003G377900 Sobic008G033600--Sobic003G377900 Sobic009G008900 Sobic009G008900 Sobic008G033600--Sobic009G008900 Sobic008G033600--Sobic001G459200 Sobic010G149300 Sobic010G149300 Sobic008G033600--Sobic010G149300 Sobic009G185800 Sobic009G185800 Sobic001G459200--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic001G459200--Sobic003G253000 Sobic001G459200--Sobic001G499300 Sobic001G459200--Sobic004G055200 Sobic001G459200--Sobic002G267500 Sobic002G046100 Sobic002G046100 Sobic001G459200--Sobic002G046100 Sobic004G272800 Sobic004G272800 Sobic001G459200--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic001G459200--Sobic003G181500 Sobic001G459200--Sobic003G130800 Sobic003G130800--Sobic009G185800 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G130800--Sobic003G181500 Sobic004G330700--Sobic004G055200 Sobic004G330700--Sobic001G459200 Sobic004G330700--Sobic009G185800 Sobic001G393500 Sobic001G393500 Sobic004G330700--Sobic001G393500 Sobic004G330700--Sobic003G130800 Sobic004G330700--Sobic001G499300 Sobic004G330700--Sobic003G181500 Sobic004G330700--Sobic010G135000 Sobic003G136000 Sobic003G136000 Sobic004G330700--Sobic003G136000 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic001G281400--Sobic009G008900 Sobic001G281400--Sobic001G499300 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic003G350300 Sobic003G350300 Sobic004G187900--Sobic003G350300 Sobic004G187900--Sobic009G008900 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic001G499300--Sobic001G281400 Sobic001G499300--Sobic009G008900 Sobic001G177800 Sobic001G177800 Sobic001G499300--Sobic001G177800 Sobic001G499300--Sobic004G187900 Sobic001G499300--Sobic001G459200 Sobic001G499300--Sobic006G173900 Sobic001G499300--Sobic001G393500 Sobic002G312400 Sobic002G312400 Sobic001G499300--Sobic002G312400 Sobic001G499300--Sobic001G477300 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic006G267200 Sobic006G267200 Sobic001G477300--Sobic006G267200 Sobic009G129000 Sobic009G129000 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic004G065500 Sobic004G065500 Sobic001G477300--Sobic004G065500 Sobic010G012500 Sobic010G012500 Sobic007G051000--Sobic010G012500 Sobic009G176000 Sobic009G176000 Sobic007G051000--Sobic009G176000 Sobic002G398901 Sobic002G398901 Sobic007G051000--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic006G083500 Sobic006G083500 Sobic007G051000--Sobic006G083500 Sobic001G018500 Sobic001G018500 Sobic007G051000--Sobic001G018500 Sobic003G209000 Sobic003G209000 Sobic007G051000--Sobic003G209000 Sobic010G204500 Sobic010G204500 Sobic007G051000--Sobic010G204500
Octagon: transcription factors


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