Gene annotation
Transcriptome id Sobic.010G149300.1
Synonym Sb10g020030, UBC28
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ubiquitin-conjugating enzyme, putative, expressed
UniProt C5Z3I6
Pfam PF00179
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G64230 : ubiquitin-conjugating enzyme 28
RAP-DB (Rice) LOC_Os06g30970.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a042379
Brachypodium KQK18220
Barley HORVU7Hr1G080800.1 , HORVU7Hr1G080800.2
Wheat TraesCS2A02G539800 , TraesCS2D02G541400 , TraesCS2D02G541400 , TraesCS7D02G335800 , TraesCS7A02G343800 , TraesCS7A02G343800 , TraesCS7B02G239300 , TraesCS2B02G570100
Populus -


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cDNA sequences
Sobic.010G149300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G281400 expressed protein -
2 Sobic.010G086200 GRAM domain containing protein, expressed -
3 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
5 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
6 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
7 Sobic.004G177700 AIG1, putative, expressed -
8 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
9 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
10 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
11 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
12 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
13 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
14 Sobic.001G124600 - -
15 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.003G377900 chitin-inducible gibberellin-responsive protein, putative, expressed -
17 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.006G230500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C


Gene co-expression network
sample Sobic010G149300 Sobic010G149300 Sobic001G281400 Sobic001G281400 Sobic010G149300--Sobic001G281400 Sobic010G086200 Sobic010G086200 Sobic010G149300--Sobic010G086200 Sobic002G267500 Sobic002G267500 Sobic010G149300--Sobic002G267500 Sobic009G143400 Sobic009G143400 Sobic010G149300--Sobic009G143400 Sobic003G181500 Sobic003G181500 Sobic010G149300--Sobic003G181500 Sobic002G046100 Sobic002G046100 Sobic010G149300--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic010G149300--Sobic004G177700 Sobic002G345300 Sobic002G345300 Sobic010G149300--Sobic002G345300 Sobic009G129000 Sobic009G129000 Sobic010G149300--Sobic009G129000 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic006G267200 Sobic006G267200 Sobic010G086200--Sobic006G267200 Sobic004G065500 Sobic004G065500 Sobic010G086200--Sobic004G065500 Sobic004G321300 Sobic004G321300 Sobic010G086200--Sobic004G321300 Sobic010G086200--Sobic009G141800 Sobic010G086200--Sobic009G129000 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic009G033700 Sobic009G033700 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic002G267500--Sobic001G281400 Sobic004G272800 Sobic004G272800 Sobic002G267500--Sobic004G272800 Sobic002G267500--Sobic002G046100 Sobic003G253000 Sobic003G253000 Sobic002G267500--Sobic003G253000 Sobic002G267500--Sobic010G149300 Sobic002G267500--Sobic002G345300 Sobic001G459200 Sobic001G459200 Sobic002G267500--Sobic001G459200 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic009G143400--Sobic010G086200 Sobic003G393700 Sobic003G393700 Sobic009G143400--Sobic003G393700 Sobic004G061200 Sobic004G061200 Sobic009G143400--Sobic004G061200 Sobic003G379800 Sobic003G379800 Sobic009G143400--Sobic003G379800 Sobic009G143400--Sobic001G281400 Sobic009G143400--Sobic002G046100 Sobic009G143400--Sobic010G149300 Sobic009G143400--Sobic002G190900 Sobic009G143400--Sobic009G033700 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900 Sobic004G177700--Sobic006G173900 Sobic002G393000 Sobic002G393000 Sobic004G177700--Sobic002G393000 Sobic006G275200 Sobic006G275200 Sobic004G177700--Sobic006G275200 Sobic010G099900 Sobic010G099900 Sobic004G177700--Sobic010G099900 Sobic004G177700--Sobic009G008900 Sobic004G177700--Sobic010G086200 Sobic004G177700--Sobic010G149300 Sobic006G230500 Sobic006G230500 Sobic004G177700--Sobic006G230500 Sobic002G414600 Sobic002G414600 Sobic004G177700--Sobic002G414600 Sobic002G345300--Sobic002G046100 Sobic002G345300--Sobic003G350300 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G345300--Sobic002G267500 Sobic002G345300--Sobic003G253000 Sobic002G345300--Sobic003G285800 Sobic002G345300--Sobic004G272800 Sobic002G345300--Sobic010G149300 Sobic009G129000--Sobic010G086200 Sobic005G028700 Sobic005G028700 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic009G129000--Sobic004G065500 Sobic010G217800 Sobic010G217800 Sobic009G129000--Sobic010G217800 Sobic009G129000--Sobic006G267200 Sobic010G204600 Sobic010G204600 Sobic009G129000--Sobic010G204600
Octagon: transcription factors


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