Gene annotation
Transcriptome id Sobic.009G143400.1
Synonym Sb09g020850, SCL1
Functional annotation chitin-inducible gibberellin-responsive protein, putative, expressed
UniProt C5YY78
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21450 : SCARECROW-like 1
RAP-DB (Rice) LOC_Os01g65900.1 : chitin-inducible gibberellin-responsive protein, putative, expressed
MaizeGDB (Corn) Zm00025a043738
Brachypodium KQK10894
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G143400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086200 GRAM domain containing protein, expressed -
2 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
3 Sobic.004G061200 expressed protein -
4 Sobic.003G379800 armadillo/beta-catenin repeat family protein, putative, expressed -
5 Sobic.001G281400 expressed protein -
6 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
7 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.002G190900 expressed protein -
9 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
10 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
11 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.002G282400 expressed protein -
13 Sobic.004G101300 expressed protein -
14 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.004G177700 AIG1, putative, expressed -
16 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
17 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
18 Sobic.009G234100 WRKY49, expressed -
19 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
20 Sobic.008G136400 expressed protein -


Gene co-expression network
sample Sobic009G143400 Sobic009G143400 Sobic010G086200 Sobic010G086200 Sobic009G143400--Sobic010G086200 Sobic003G393700 Sobic003G393700 Sobic009G143400--Sobic003G393700 Sobic004G061200 Sobic004G061200 Sobic009G143400--Sobic004G061200 Sobic003G379800 Sobic003G379800 Sobic009G143400--Sobic003G379800 Sobic001G281400 Sobic001G281400 Sobic009G143400--Sobic001G281400 Sobic002G046100 Sobic002G046100 Sobic009G143400--Sobic002G046100 Sobic010G149300 Sobic010G149300 Sobic009G143400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic009G143400--Sobic002G190900 Sobic009G033700 Sobic009G033700 Sobic009G143400--Sobic009G033700 Sobic006G267200 Sobic006G267200 Sobic010G086200--Sobic006G267200 Sobic004G065500 Sobic004G065500 Sobic010G086200--Sobic004G065500 Sobic004G321300 Sobic004G321300 Sobic010G086200--Sobic004G321300 Sobic009G141800 Sobic009G141800 Sobic010G086200--Sobic009G141800 Sobic009G129000 Sobic009G129000 Sobic010G086200--Sobic009G129000 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic009G077800 Sobic009G077800 Sobic003G393700--Sobic009G077800 Sobic001G070800 Sobic001G070800 Sobic003G393700--Sobic001G070800 Sobic009G234100 Sobic009G234100 Sobic003G393700--Sobic009G234100 Sobic009G139400 Sobic009G139400 Sobic003G393700--Sobic009G139400 Sobic003G393700--Sobic004G321300 Sobic003G297600 Sobic003G297600 Sobic003G393700--Sobic003G297600 Sobic002G393000 Sobic002G393000 Sobic003G393700--Sobic002G393000 Sobic003G393700--Sobic004G061200 Sobic001G177800 Sobic001G177800 Sobic003G393700--Sobic001G177800 Sobic004G061200--Sobic004G321300 Sobic004G061200--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic004G061200--Sobic001G038900 Sobic004G061200--Sobic003G393700 Sobic009G159400 Sobic009G159400 Sobic004G061200--Sobic009G159400 Sobic004G061200--Sobic010G086200 Sobic008G136400 Sobic008G136400 Sobic004G061200--Sobic008G136400 Sobic004G061200--Sobic009G143400 Sobic004G061200--Sobic002G046100 Sobic003G379800--Sobic009G143400 Sobic003G379800--Sobic004G061200 Sobic003G379800--Sobic003G393700 Sobic004G069200 Sobic004G069200 Sobic003G379800--Sobic004G069200 Sobic001G389000 Sobic001G389000 Sobic003G379800--Sobic001G389000 Sobic003G379800--Sobic010G086200 Sobic003G379800--Sobic001G070800 Sobic003G379800--Sobic002G393000 Sobic009G159200 Sobic009G159200 Sobic003G379800--Sobic009G159200 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G345300 Sobic002G345300 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900 Sobic010G149300--Sobic001G281400 Sobic010G149300--Sobic010G086200 Sobic010G149300--Sobic002G267500 Sobic010G149300--Sobic009G143400 Sobic003G181500 Sobic003G181500 Sobic010G149300--Sobic003G181500 Sobic010G149300--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic010G149300--Sobic004G177700 Sobic010G149300--Sobic002G345300 Sobic010G149300--Sobic009G129000 Sobic002G398901 Sobic002G398901 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic007G051000 Sobic007G051000 Sobic002G190900--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic005G188100 Sobic005G188100 Sobic002G190900--Sobic005G188100 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic009G033700--Sobic010G086200 Sobic003G037800 Sobic003G037800 Sobic009G033700--Sobic003G037800 Sobic009G033700--Sobic001G281400 Sobic003G249800 Sobic003G249800 Sobic009G033700--Sobic003G249800 Sobic007G198100 Sobic007G198100 Sobic009G033700--Sobic007G198100 Sobic009G033700--Sobic009G129000 Sobic002G245100 Sobic002G245100 Sobic009G033700--Sobic002G245100 Sobic009G033700--Sobic009G143400 Sobic009G033700--Sobic004G065500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.