Gene annotation
Transcriptome id Sobic.003G393700.3,Sobic.003G393700.1,Sobic.003G393700.2
Synonym Sb03g043120
Functional annotation zinc finger, RING-type, putative, expressed
UniProt A0A1W0W106 , A0A1B6Q7Q3 , A0A1B6Q7R9
Pfam PF13920
Panther DB PTHR15315 PTHR15315:SF22
NCBI CDD KOG1039; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13195 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g67850.1 : zinc finger, RING-type, putative, expressed
MaizeGDB (Corn) Zm00025a026371
Brachypodium KQK11091
Barley -
Wheat TraesCS2B02G148700 , TraesCS2B02G148700 , TraesCS3D02G384200 , TraesCS3A02G391400 , TraesCS3B02G423300
Populus -


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cDNA sequences
Sobic.003G393700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G077800 expressed protein -
2 Sobic.001G070800 expressed protein -
3 Sobic.009G234100 WRKY49, expressed -
4 Sobic.009G139400 expressed protein -
5 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
7 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
8 Sobic.004G061200 expressed protein -
9 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
10 Sobic.001G477600 zinc finger protein, putative, expressed -
11 Sobic.005G063100 expressed protein -
12 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
13 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
15 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
16 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
17 Sobic.008G136400 expressed protein -
18 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
20 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G393700 Sobic003G393700 Sobic009G077800 Sobic009G077800 Sobic003G393700--Sobic009G077800 Sobic001G070800 Sobic001G070800 Sobic003G393700--Sobic001G070800 Sobic009G234100 Sobic009G234100 Sobic003G393700--Sobic009G234100 Sobic009G139400 Sobic009G139400 Sobic003G393700--Sobic009G139400 Sobic004G321300 Sobic004G321300 Sobic003G393700--Sobic004G321300 Sobic003G297600 Sobic003G297600 Sobic003G393700--Sobic003G297600 Sobic002G393000 Sobic002G393000 Sobic003G393700--Sobic002G393000 Sobic004G061200 Sobic004G061200 Sobic003G393700--Sobic004G061200 Sobic001G177800 Sobic001G177800 Sobic003G393700--Sobic001G177800 Sobic009G077800--Sobic003G297600 Sobic009G077800--Sobic009G139400 Sobic009G077800--Sobic003G393700 Sobic009G077800--Sobic001G070800 Sobic002G055700 Sobic002G055700 Sobic009G077800--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic009G077800--Sobic002G017800 Sobic005G029200 Sobic005G029200 Sobic009G077800--Sobic005G029200 Sobic001G325400 Sobic001G325400 Sobic009G077800--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic009G077800--Sobic007G087200 Sobic001G070800--Sobic003G297600 Sobic001G070800--Sobic009G077800 Sobic001G070800--Sobic003G393700 Sobic002G416600 Sobic002G416600 Sobic001G070800--Sobic002G416600 Sobic001G070800--Sobic009G139400 Sobic001G070800--Sobic001G177800 Sobic001G317200 Sobic001G317200 Sobic001G070800--Sobic001G317200 Sobic006G099900 Sobic006G099900 Sobic001G070800--Sobic006G099900 Sobic001G252300 Sobic001G252300 Sobic001G070800--Sobic001G252300 Sobic004G208700 Sobic004G208700 Sobic009G234100--Sobic004G208700 Sobic005G063100 Sobic005G063100 Sobic009G234100--Sobic005G063100 Sobic003G345100 Sobic003G345100 Sobic009G234100--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic009G234100--Sobic003G286600 Sobic001G435000 Sobic001G435000 Sobic009G234100--Sobic001G435000 Sobic008G050600 Sobic008G050600 Sobic009G234100--Sobic008G050600 Sobic005G099000 Sobic005G099000 Sobic009G234100--Sobic005G099000 Sobic007G155000 Sobic007G155000 Sobic009G234100--Sobic007G155000 Sobic010G259600 Sobic010G259600 Sobic009G234100--Sobic010G259600 Sobic009G139400--Sobic009G077800 Sobic009G139400--Sobic003G297600 Sobic001G119400 Sobic001G119400 Sobic009G139400--Sobic001G119400 Sobic009G139400--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic002G353900 Sobic002G353900 Sobic009G139400--Sobic002G353900 Sobic003G382600 Sobic003G382600 Sobic009G139400--Sobic003G382600 Sobic009G139400--Sobic005G029200 Sobic004G237800 Sobic004G237800 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic004G321300--Sobic003G345100 Sobic003G297600--Sobic009G077800 Sobic003G297600--Sobic009G139400 Sobic003G297600--Sobic001G070800 Sobic003G297600--Sobic005G029200 Sobic004G189400 Sobic004G189400 Sobic003G297600--Sobic004G189400 Sobic003G297600--Sobic008G050600 Sobic003G297600--Sobic001G317200 Sobic003G297600--Sobic005G091500 Sobic003G297600--Sobic002G055700 Sobic002G393000--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic002G393000--Sobic006G275200 Sobic006G173900 Sobic006G173900 Sobic002G393000--Sobic006G173900 Sobic001G423800 Sobic001G423800 Sobic002G393000--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G414600 Sobic002G414600 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic004G061200--Sobic004G321300 Sobic004G061200--Sobic002G393000 Sobic004G061200--Sobic001G038900 Sobic004G061200--Sobic003G393700 Sobic004G061200--Sobic009G159400 Sobic010G086200 Sobic010G086200 Sobic004G061200--Sobic010G086200 Sobic004G061200--Sobic008G136400 Sobic009G143400 Sobic009G143400 Sobic004G061200--Sobic009G143400 Sobic002G046100 Sobic002G046100 Sobic004G061200--Sobic002G046100 Sobic001G177800--Sobic007G184600 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic001G177800--Sobic004G189400 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300
Octagon: transcription factors


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