Gene annotation
Transcriptome id Sobic.003G249800.1
Synonym Sb03g030610
Functional annotation 60S ribosomal protein L18a-1, putative, expressed
UniProt C5XG01
Pfam -
Panther DB PTHR10052 PTHR10052:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17080 : Ribosomal protein L18ae family
RAP-DB (Rice) LOC_Os01g47680.1 : 60S ribosomal protein L18a-1, putative, expressed
MaizeGDB (Corn) Zm00025a038758
Brachypodium KQK09094 , KQK04860
Barley -
Wheat TraesCS3A02G247400 , TraesCS3D02G244000
Populus -


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cDNA sequences
Sobic.003G249800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G161000 protein kinase domain containing protein, expressed -
2 Sobic.001G037000 PHD finger protein, putative, expressed -
3 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
4 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
5 Sobic.002G282400 expressed protein -
6 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
7 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
8 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
9 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
10 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
11 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
12 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
13 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
14 Sobic.010G086200 GRAM domain containing protein, expressed -
15 Sobic.004G061200 expressed protein -
16 Sobic.001G445800 expressed protein -
17 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
18 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
19 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
20 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1


Gene co-expression network
sample Sobic003G249800 Sobic003G249800 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic008G161000--Sobic003G249800 Sobic008G161000--Sobic009G033700 Sobic009G152200 Sobic009G152200 Sobic008G161000--Sobic009G152200 Sobic008G161000--Sobic001G037000 Sobic009G129000 Sobic009G129000 Sobic008G161000--Sobic009G129000 Sobic009G016201 Sobic009G016201 Sobic008G161000--Sobic009G016201 Sobic010G204300 Sobic010G204300 Sobic008G161000--Sobic010G204300 Sobic010G204600 Sobic010G204600 Sobic008G161000--Sobic010G204600 Sobic010G213400 Sobic010G213400 Sobic008G161000--Sobic010G213400 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic001G037000--Sobic003G181500 Sobic010G086200 Sobic010G086200 Sobic009G033700--Sobic010G086200 Sobic003G037800 Sobic003G037800 Sobic009G033700--Sobic003G037800 Sobic001G281400 Sobic001G281400 Sobic009G033700--Sobic001G281400 Sobic009G033700--Sobic003G249800 Sobic007G198100 Sobic007G198100 Sobic009G033700--Sobic007G198100 Sobic009G033700--Sobic009G129000 Sobic002G245100 Sobic002G245100 Sobic009G033700--Sobic002G245100 Sobic009G033700--Sobic009G143400 Sobic004G065500 Sobic004G065500 Sobic009G033700--Sobic004G065500 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G345300 Sobic002G345300 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic002G282400--Sobic003G249800 Sobic010G243200 Sobic010G243200 Sobic002G282400--Sobic010G243200 Sobic002G282400--Sobic009G143400 Sobic006G141500 Sobic006G141500 Sobic002G282400--Sobic006G141500 Sobic002G282400--Sobic003G181500 Sobic002G282400--Sobic001G037000 Sobic001G071100 Sobic001G071100 Sobic002G282400--Sobic001G071100 Sobic002G282400--Sobic002G211900 Sobic002G393000 Sobic002G393000 Sobic002G282400--Sobic002G393000 Sobic004G145801 Sobic004G145801 Sobic002G330000--Sobic004G145801 Sobic003G321700 Sobic003G321700 Sobic002G330000--Sobic003G321700 Sobic007G212600 Sobic007G212600 Sobic002G330000--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic002G330000--Sobic010G260100 Sobic002G330000--Sobic003G249800 Sobic005G019700 Sobic005G019700 Sobic002G330000--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic002G330000--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic002G330000--Sobic010G230700 Sobic001G390300 Sobic001G390300 Sobic002G330000--Sobic001G390300 Sobic009G143400--Sobic010G086200 Sobic003G393700 Sobic003G393700 Sobic009G143400--Sobic003G393700 Sobic009G143400--Sobic004G061200 Sobic003G379800 Sobic003G379800 Sobic009G143400--Sobic003G379800 Sobic009G143400--Sobic001G281400 Sobic009G143400--Sobic002G046100 Sobic010G149300 Sobic010G149300 Sobic009G143400--Sobic010G149300 Sobic009G143400--Sobic002G190900 Sobic009G143400--Sobic009G033700 Sobic002G211900--Sobic003G249800 Sobic001G015100 Sobic001G015100 Sobic002G211900--Sobic001G015100 Sobic002G211900--Sobic003G181500 Sobic004G177700 Sobic004G177700 Sobic002G211900--Sobic004G177700 Sobic002G211900--Sobic002G046100 Sobic002G211900--Sobic001G477300 Sobic002G312400 Sobic002G312400 Sobic002G211900--Sobic002G312400 Sobic001G095300 Sobic001G095300 Sobic002G211900--Sobic001G095300 Sobic001G308300 Sobic001G308300 Sobic002G211900--Sobic001G308300 Sobic004G187900 Sobic004G187900 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic003G181500--Sobic010G149300 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100
Octagon: transcription factors


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