Gene annotation
Transcriptome id Sobic.001G019900.1
Synonym Sb01g001920
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WT38
Pfam PF06803
Panther DB PTHR22894
NCBI CDD -
KEGG Orthology K15707; RING finger protein 170
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72175 : RING/U-box protein with domain of unknown function (DUF 1232)
RAP-DB (Rice) LOC_Os03g62250.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK12239 , KQK12238
Barley HORVU5Hr1G118690.8 , HORVU5Hr1G118690.1 , HORVU5Hr1G118690.2 , HORVU5Hr1G118690.3 , HORVU5Hr1G118690.4 , HORVU5Hr1G118690.5 , HORVU5Hr1G118690.7
Wheat TraesCS5B02G519400 , TraesCS5B02G519400 , TraesCS4A02G352200 , TraesCS4A02G352200 , TraesCS5D02G518700 , TraesCS5D02G518700
Populus -


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cDNA sequences
Sobic.001G019900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
2 Sobic.005G228000 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
3 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
4 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
5 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
6 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
7 Sobic.001G445800 expressed protein -
8 Sobic.002G212200 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
9 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
10 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
11 Sobic.005G092800 expressed protein -
12 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1
13 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
14 Sobic.001G084900 expressed protein -
15 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
16 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
17 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
18 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
19 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
20 Sobic.004G061200 expressed protein -


Gene co-expression network
sample Sobic001G019900 Sobic001G019900 Sobic001G067601 Sobic001G067601 Sobic001G019900--Sobic001G067601 Sobic005G228000 Sobic005G228000 Sobic001G019900--Sobic005G228000 Sobic009G023200 Sobic009G023200 Sobic001G019900--Sobic009G023200 Sobic003G350300 Sobic003G350300 Sobic001G019900--Sobic003G350300 Sobic003G249800 Sobic003G249800 Sobic001G019900--Sobic003G249800 Sobic002G046100 Sobic002G046100 Sobic001G019900--Sobic002G046100 Sobic001G445800 Sobic001G445800 Sobic001G019900--Sobic001G445800 Sobic002G212200 Sobic002G212200 Sobic001G019900--Sobic002G212200 Sobic003G321700 Sobic003G321700 Sobic001G019900--Sobic003G321700 Sobic001G067601--Sobic001G019900 Sobic001G067601--Sobic009G023200 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic001G067601--Sobic003G063200 Sobic001G037000 Sobic001G037000 Sobic001G067601--Sobic001G037000 Sobic001G067601--Sobic005G228000 Sobic003G181500 Sobic003G181500 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic005G228000--Sobic001G019900 Sobic005G228000--Sobic002G212200 Sobic005G228000--Sobic001G067601 Sobic002G345300 Sobic002G345300 Sobic005G228000--Sobic002G345300 Sobic005G228000--Sobic009G023200 Sobic004G157000 Sobic004G157000 Sobic005G228000--Sobic004G157000 Sobic005G228000--Sobic003G350300 Sobic009G094450 Sobic009G094450 Sobic005G228000--Sobic009G094450 Sobic010G047400 Sobic010G047400 Sobic005G228000--Sobic010G047400 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic009G023200--Sobic003G063200 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic003G350300--Sobic004G187900 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G350300--Sobic003G181500 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G249800--Sobic003G181500 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic008G129400 Sobic008G129400 Sobic001G445800--Sobic008G129400 Sobic001G445800--Sobic003G321700 Sobic002G078400 Sobic002G078400 Sobic001G445800--Sobic002G078400 Sobic001G445800--Sobic003G249800 Sobic001G445800--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic001G445800--Sobic010G018400 Sobic010G154700 Sobic010G154700 Sobic001G445800--Sobic010G154700 Sobic001G445800--Sobic001G019900 Sobic001G445800--Sobic002G190900 Sobic002G212200--Sobic005G228000 Sobic002G212200--Sobic001G019900 Sobic002G212200--Sobic001G067601 Sobic007G107000 Sobic007G107000 Sobic002G212200--Sobic007G107000 Sobic002G212200--Sobic003G181500 Sobic002G212200--Sobic003G162700 Sobic002G212200--Sobic009G023200 Sobic002G212200--Sobic002G282400 Sobic001G064800 Sobic001G064800 Sobic002G212200--Sobic001G064800 Sobic007G212600 Sobic007G212600 Sobic003G321700--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic003G321700--Sobic010G260100 Sobic001G091801 Sobic001G091801 Sobic003G321700--Sobic001G091801 Sobic007G190800 Sobic007G190800 Sobic003G321700--Sobic007G190800 Sobic003G322400 Sobic003G322400 Sobic003G321700--Sobic003G322400 Sobic010G259900 Sobic010G259900 Sobic003G321700--Sobic010G259900 Sobic004G145801 Sobic004G145801 Sobic003G321700--Sobic004G145801 Sobic006G147000 Sobic006G147000 Sobic003G321700--Sobic006G147000 Sobic004G104100 Sobic004G104100 Sobic003G321700--Sobic004G104100
Octagon: transcription factors


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