Gene annotation
Transcriptome id Sobic.002G212200.1,Sobic.002G212200.2
Synonym Sb02g025540
Functional annotation protein binding protein, putative, expressed
UniProt A0A1W0W5D2 , C5XDL4
Pfam PF01485
Panther DB PTHR11685 PTHR11685:SF139
NCBI CDD -
KEGG Orthology K11975; E3 ubiquitin-protein ligase RNF144
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G53690 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g26460.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS5D02G223500 , TraesCS5A02G215700 , TraesCS5B02G214200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G228000 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
2 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
3 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
4 Sobic.007G107000 pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
5 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
6 Sobic.003G162700 expressed protein -
7 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
8 Sobic.002G282400 expressed protein -
9 Sobic.001G064800 expp1 protein precursor, putative, expressed -
10 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
11 Sobic.008G011600 ubiquitin-like protein 5, putative, expressed K13113: UBL5, ubiquitin-like protein 5
12 Sobic.009G094450 - -
13 Sobic.004G179600 VP15, putative, expressed K03635: MOCS2B, molybdopterin synthase catalytic subunit
14 Sobic.009G230100 expressed protein -
15 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
16 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
17 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
18 Sobic.010G047400 "HGW(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659929)@proline-rich cell wall protein-like, putative, expressed -
19 Sobic.001G445800 expressed protein -
20 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -


Gene co-expression network
sample Sobic002G212200 Sobic002G212200 Sobic005G228000 Sobic005G228000 Sobic002G212200--Sobic005G228000 Sobic001G019900 Sobic001G019900 Sobic002G212200--Sobic001G019900 Sobic001G067601 Sobic001G067601 Sobic002G212200--Sobic001G067601 Sobic007G107000 Sobic007G107000 Sobic002G212200--Sobic007G107000 Sobic003G181500 Sobic003G181500 Sobic002G212200--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic002G212200--Sobic003G162700 Sobic009G023200 Sobic009G023200 Sobic002G212200--Sobic009G023200 Sobic002G282400 Sobic002G282400 Sobic002G212200--Sobic002G282400 Sobic001G064800 Sobic001G064800 Sobic002G212200--Sobic001G064800 Sobic005G228000--Sobic001G019900 Sobic005G228000--Sobic002G212200 Sobic005G228000--Sobic001G067601 Sobic002G345300 Sobic002G345300 Sobic005G228000--Sobic002G345300 Sobic005G228000--Sobic009G023200 Sobic004G157000 Sobic004G157000 Sobic005G228000--Sobic004G157000 Sobic003G350300 Sobic003G350300 Sobic005G228000--Sobic003G350300 Sobic009G094450 Sobic009G094450 Sobic005G228000--Sobic009G094450 Sobic010G047400 Sobic010G047400 Sobic005G228000--Sobic010G047400 Sobic001G019900--Sobic001G067601 Sobic001G019900--Sobic005G228000 Sobic001G019900--Sobic009G023200 Sobic001G019900--Sobic003G350300 Sobic003G249800 Sobic003G249800 Sobic001G019900--Sobic003G249800 Sobic002G046100 Sobic002G046100 Sobic001G019900--Sobic002G046100 Sobic001G445800 Sobic001G445800 Sobic001G019900--Sobic001G445800 Sobic001G019900--Sobic002G212200 Sobic003G321700 Sobic003G321700 Sobic001G019900--Sobic003G321700 Sobic001G067601--Sobic001G019900 Sobic001G067601--Sobic009G023200 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic001G067601--Sobic003G063200 Sobic001G037000 Sobic001G037000 Sobic001G067601--Sobic001G037000 Sobic001G067601--Sobic005G228000 Sobic001G067601--Sobic003G181500 Sobic001G067601--Sobic003G162700 Sobic009G070400 Sobic009G070400 Sobic007G107000--Sobic009G070400 Sobic001G025300 Sobic001G025300 Sobic007G107000--Sobic001G025300 Sobic002G183200 Sobic002G183200 Sobic007G107000--Sobic002G183200 Sobic009G221400 Sobic009G221400 Sobic007G107000--Sobic009G221400 Sobic003G286600 Sobic003G286600 Sobic007G107000--Sobic003G286600 Sobic010G176600 Sobic010G176600 Sobic007G107000--Sobic010G176600 Sobic007G107000--Sobic002G212200 Sobic002G393000 Sobic002G393000 Sobic007G107000--Sobic002G393000 Sobic007G025500 Sobic007G025500 Sobic007G107000--Sobic007G025500 Sobic004G187900 Sobic004G187900 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic001G281400 Sobic001G281400 Sobic003G181500--Sobic001G281400 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100 Sobic003G162700--Sobic001G067601 Sobic003G162700--Sobic009G070400 Sobic002G333400 Sobic002G333400 Sobic003G162700--Sobic002G333400 Sobic006G158600 Sobic006G158600 Sobic003G162700--Sobic006G158600 Sobic003G334600 Sobic003G334600 Sobic003G162700--Sobic003G334600 Sobic010G238600 Sobic010G238600 Sobic003G162700--Sobic010G238600 Sobic010G274900 Sobic010G274900 Sobic003G162700--Sobic010G274900 Sobic003G162700--Sobic007G025500 Sobic008G136400 Sobic008G136400 Sobic003G162700--Sobic008G136400 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic009G023200--Sobic003G063200 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic002G282400--Sobic003G249800 Sobic010G243200 Sobic010G243200 Sobic002G282400--Sobic010G243200 Sobic009G143400 Sobic009G143400 Sobic002G282400--Sobic009G143400 Sobic006G141500 Sobic006G141500 Sobic002G282400--Sobic006G141500 Sobic002G282400--Sobic003G181500 Sobic002G282400--Sobic001G037000 Sobic001G071100 Sobic001G071100 Sobic002G282400--Sobic001G071100 Sobic002G282400--Sobic002G211900 Sobic002G282400--Sobic002G393000 Sobic006G182100 Sobic006G182100 Sobic001G064800--Sobic006G182100 Sobic002G261800 Sobic002G261800 Sobic001G064800--Sobic002G261800 Sobic001G064800--Sobic001G067601 Sobic010G153100 Sobic010G153100 Sobic001G064800--Sobic010G153100 Sobic001G064800--Sobic001G019900 Sobic001G064800--Sobic001G445800 Sobic010G204300 Sobic010G204300 Sobic001G064800--Sobic010G204300 Sobic004G157800 Sobic004G157800 Sobic001G064800--Sobic004G157800 Sobic001G206400 Sobic001G206400 Sobic001G064800--Sobic001G206400
Octagon: transcription factors


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