Gene annotation
Transcriptome id Sobic.007G107000.1
Synonym Sb07g015030
Functional annotation pirin, putative, expressed
UniProt C5YK90
Pfam PF05726 PF02678
Panther DB PTHR13903 PTHR13903:SF11
NCBI CDD -
KEGG Orthology K06911; quercetin 2,3-dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43120 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os08g27720.2 : pirin, putative, expressed
MaizeGDB (Corn) Zm00025a006179
Brachypodium KQJ96236 , KQJ96235
Barley -
Wheat TraesCS1B02G420000 , TraesCS1A02G391900 , TraesCS1D02G400000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G107000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G070400 expressed protein -
2 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
4 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
5 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
6 Sobic.010G176600 - -
7 Sobic.002G212200 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
8 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
9 Sobic.007G025500 amino acid transporter, putative, expressed -
10 Sobic.006G204300 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor TF2, putative, expressed -
11 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
12 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
13 Sobic.006G106800 - -
14 Sobic.001G423800 DNA binding protein, putative, expressed -
15 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
16 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
17 Sobic.009G077800 expressed protein -
18 Sobic.002G282400 expressed protein -
19 Sobic.009G234100 WRKY49, expressed -
20 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic007G107000 Sobic007G107000 Sobic009G070400 Sobic009G070400 Sobic007G107000--Sobic009G070400 Sobic001G025300 Sobic001G025300 Sobic007G107000--Sobic001G025300 Sobic002G183200 Sobic002G183200 Sobic007G107000--Sobic002G183200 Sobic009G221400 Sobic009G221400 Sobic007G107000--Sobic009G221400 Sobic003G286600 Sobic003G286600 Sobic007G107000--Sobic003G286600 Sobic010G176600 Sobic010G176600 Sobic007G107000--Sobic010G176600 Sobic002G212200 Sobic002G212200 Sobic007G107000--Sobic002G212200 Sobic002G393000 Sobic002G393000 Sobic007G107000--Sobic002G393000 Sobic007G025500 Sobic007G025500 Sobic007G107000--Sobic007G025500 Sobic009G070400--Sobic010G176600 Sobic001G423800 Sobic001G423800 Sobic009G070400--Sobic001G423800 Sobic009G070400--Sobic002G393000 Sobic008G136400 Sobic008G136400 Sobic009G070400--Sobic008G136400 Sobic004G301000 Sobic004G301000 Sobic009G070400--Sobic004G301000 Sobic006G158600 Sobic006G158600 Sobic009G070400--Sobic006G158600 Sobic009G070400--Sobic003G286600 Sobic002G140400 Sobic002G140400 Sobic009G070400--Sobic002G140400 Sobic001G038900 Sobic001G038900 Sobic009G070400--Sobic001G038900 Sobic001G025101 Sobic001G025101 Sobic001G025300--Sobic001G025101 Sobic002G416600 Sobic002G416600 Sobic001G025300--Sobic002G416600 Sobic001G025300--Sobic002G183200 Sobic001G025300--Sobic003G286600 Sobic005G051200 Sobic005G051200 Sobic001G025300--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic001G025300--Sobic001G317200 Sobic004G166700 Sobic004G166700 Sobic001G025300--Sobic004G166700 Sobic006G099900 Sobic006G099900 Sobic001G025300--Sobic006G099900 Sobic001G070800 Sobic001G070800 Sobic001G025300--Sobic001G070800 Sobic002G183200--Sobic003G286600 Sobic005G091500 Sobic005G091500 Sobic002G183200--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic002G183200--Sobic004G189400 Sobic002G183200--Sobic001G025300 Sobic001G119100 Sobic001G119100 Sobic002G183200--Sobic001G119100 Sobic002G183200--Sobic010G176600 Sobic002G183200--Sobic006G099900 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic002G353900 Sobic002G353900 Sobic009G221400--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic009G221400--Sobic003G041600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic002G336600 Sobic002G336600 Sobic009G221400--Sobic002G336600 Sobic001G477600 Sobic001G477600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G221400--Sobic009G070400 Sobic002G192000 Sobic002G192000 Sobic009G221400--Sobic002G192000 Sobic003G286600--Sobic010G176600 Sobic008G050600 Sobic008G050600 Sobic003G286600--Sobic008G050600 Sobic005G063100 Sobic005G063100 Sobic003G286600--Sobic005G063100 Sobic003G286600--Sobic006G099900 Sobic003G286600--Sobic004G208700 Sobic003G286600--Sobic002G140400 Sobic003G345100 Sobic003G345100 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic009G164600 Sobic009G164600 Sobic003G286600--Sobic009G164600 Sobic010G176600--Sobic003G286600 Sobic010G176600--Sobic005G063100 Sobic010G176600--Sobic002G140400 Sobic010G176600--Sobic008G050600 Sobic010G176600--Sobic001G423800 Sobic009G234100 Sobic009G234100 Sobic010G176600--Sobic009G234100 Sobic010G084700 Sobic010G084700 Sobic010G176600--Sobic010G084700 Sobic003G116800 Sobic003G116800 Sobic010G176600--Sobic003G116800 Sobic010G176600--Sobic004G189400 Sobic005G228000 Sobic005G228000 Sobic002G212200--Sobic005G228000 Sobic001G019900 Sobic001G019900 Sobic002G212200--Sobic001G019900 Sobic001G067601 Sobic001G067601 Sobic002G212200--Sobic001G067601 Sobic002G212200--Sobic007G107000 Sobic003G181500 Sobic003G181500 Sobic002G212200--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic002G212200--Sobic003G162700 Sobic009G023200 Sobic009G023200 Sobic002G212200--Sobic009G023200 Sobic002G282400 Sobic002G282400 Sobic002G212200--Sobic002G282400 Sobic001G064800 Sobic001G064800 Sobic002G212200--Sobic001G064800 Sobic001G119400 Sobic001G119400 Sobic002G393000--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic002G393000--Sobic006G275200 Sobic006G173900 Sobic006G173900 Sobic002G393000--Sobic006G173900 Sobic002G393000--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G414600 Sobic002G414600 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic002G034800 Sobic002G034800 Sobic007G025500--Sobic002G034800 Sobic007G025500--Sobic001G119400 Sobic003G297600 Sobic003G297600 Sobic007G025500--Sobic003G297600 Sobic002G366600 Sobic002G366600 Sobic007G025500--Sobic002G366600 Sobic009G139400 Sobic009G139400 Sobic007G025500--Sobic009G139400 Sobic010G066700 Sobic010G066700 Sobic007G025500--Sobic010G066700 Sobic007G025500--Sobic009G183400 Sobic009G077800 Sobic009G077800 Sobic007G025500--Sobic009G077800 Sobic010G136000 Sobic010G136000 Sobic007G025500--Sobic010G136000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.