Gene annotation
Transcriptome id Sobic.009G221400.1
Synonym TEM1, EDF1, Sb09g027530
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1B6P9U1
Pfam PF00847 PF02362
Panther DB PTHR31140 PTHR31140:SF3
NCBI CDD -
KEGG Orthology K09287; RAV-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G13260 : related to ABI3/VP1 1
RAP-DB (Rice) LOC_Os05g47650.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003162 , Zm00025a044450 , Zm00025a052255 , Zm00025a027935 , Zm00025a038878 , Zm00025a036522 , Zm00025a023512
Brachypodium KQK05045 , KQK02620 , KQK00795 , KQK02618 , KQK02619 , KQJ84190 , KQJ97599 , PNT61705 , KQK09293 , KQK23932 , PNT69241
Barley HORVU3Hr1G010190.2 , HORVU3Hr1G010190.3 , HORVU3Hr1G010190.1 , HORVU3Hr1G010190.6 , HORVU3Hr1G010190.4 , HORVU3Hr1G010190.5 , HORVU4Hr1G082030.1 , HORVU4Hr1G082030.3 , HORVU4Hr1G082030.2 , HORVU4Hr1G082030.5 , HORVU3Hr1G064640.1 , HORVU3Hr1G064640.3 , HORVU3Hr1G064640.2 , HORVU3Hr1G064640.5 , HORVU3Hr1G064640.4 , HORVU3Hr1G064640.7 , HORVU3Hr1G064640.6 , HORVU3Hr1G064640.8 , HORVU0Hr1G022200.1 , HORVU0Hr1G022200.2 , HORVU0Hr1G022200.3 , HORVU1Hr1G082670.10 , HORVU3Hr1G010240.1 , HORVU4Hr1G074300.2 , HORVU4Hr1G074300.3 , HORVU4Hr1G074300.1 , HORVU4Hr1G074300.6 , HORVU4Hr1G074300.4 , HORVU4Hr1G074300.5 , HORVU3Hr1G064590.1 , HORVU3Hr1G010060.2 , HORVU3Hr1G010060.1 , HORVU4Hr1G082090.2 , HORVU4Hr1G082030.4 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU1Hr1G082670.1 , HORVU7Hr1G002230.1 , HORVU1Hr1G051780.2 , HORVU3Hr1G010200.1 , HORVU4Hr1G082090.3 , HORVU4Hr1G082090.1 , HORVU4Hr1G082090.4 , HORVU3Hr1G010100.1 , HORVU3Hr1G010100.2
Wheat TraesCSU02G227200 , TraesCSU02G231000 , TraesCS1A02G200500 , TraesCS3D02G260100 , TraesCS7D02G022400 , TraesCS1B02G215000 , TraesCS4A02G464900 , TraesCS7D02G020700 , TraesCS4D02G348900 , TraesCS4D02G348900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
2 Sobic.003G041600 DUF623 domain containing protein, expressed -
3 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
4 Sobic.008G044300 U-box domain-containing protein, putative, expressed -
5 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
6 Sobic.001G477600 zinc finger protein, putative, expressed -
7 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
8 Sobic.009G070400 expressed protein -
9 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
10 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
12 Sobic.009G234100 WRKY49, expressed -
13 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
14 Sobic.003G382600 ARGOS, putative, expressed -
15 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
16 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
18 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
19 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
20 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23


Gene co-expression network
sample Sobic009G221400 Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic009G221400--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic009G221400--Sobic003G041600 Sobic006G158600 Sobic006G158600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic002G336600 Sobic002G336600 Sobic009G221400--Sobic002G336600 Sobic001G477600 Sobic001G477600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic002G192000 Sobic002G192000 Sobic009G221400--Sobic002G192000 Sobic002G055700 Sobic002G055700 Sobic002G353900--Sobic002G055700 Sobic003G382600 Sobic003G382600 Sobic002G353900--Sobic003G382600 Sobic001G367600 Sobic001G367600 Sobic002G353900--Sobic001G367600 Sobic002G302500 Sobic002G302500 Sobic002G353900--Sobic002G302500 Sobic002G353900--Sobic002G192000 Sobic002G353900--Sobic009G221400 Sobic009G139400 Sobic009G139400 Sobic002G353900--Sobic009G139400 Sobic002G353900--Sobic006G158600 Sobic009G234100 Sobic009G234100 Sobic002G353900--Sobic009G234100 Sobic003G041600--Sobic009G221400 Sobic003G041600--Sobic008G044300 Sobic006G143400 Sobic006G143400 Sobic003G041600--Sobic006G143400 Sobic009G069800 Sobic009G069800 Sobic003G041600--Sobic009G069800 Sobic003G364300 Sobic003G364300 Sobic003G041600--Sobic003G364300 Sobic001G091600 Sobic001G091600 Sobic003G041600--Sobic001G091600 Sobic010G166500 Sobic010G166500 Sobic003G041600--Sobic010G166500 Sobic003G041600--Sobic001G477600 Sobic010G156500 Sobic010G156500 Sobic003G041600--Sobic010G156500 Sobic008G136400 Sobic008G136400 Sobic006G158600--Sobic008G136400 Sobic006G158600--Sobic002G192000 Sobic002G140400 Sobic002G140400 Sobic006G158600--Sobic002G140400 Sobic002G333400 Sobic002G333400 Sobic006G158600--Sobic002G333400 Sobic006G056400 Sobic006G056400 Sobic006G158600--Sobic006G056400 Sobic001G038900 Sobic001G038900 Sobic006G158600--Sobic001G038900 Sobic001G423800 Sobic001G423800 Sobic006G158600--Sobic001G423800 Sobic006G158600--Sobic002G336600 Sobic004G243100 Sobic004G243100 Sobic006G158600--Sobic004G243100 Sobic001G310600 Sobic001G310600 Sobic008G044300--Sobic001G310600 Sobic008G044300--Sobic003G041600 Sobic008G044300--Sobic009G221400 Sobic001G112200 Sobic001G112200 Sobic008G044300--Sobic001G112200 Sobic003G364600 Sobic003G364600 Sobic008G044300--Sobic003G364600 Sobic005G186100 Sobic005G186100 Sobic008G044300--Sobic005G186100 Sobic001G279500 Sobic001G279500 Sobic008G044300--Sobic001G279500 Sobic010G225251 Sobic010G225251 Sobic008G044300--Sobic010G225251 Sobic002G338500 Sobic002G338500 Sobic008G044300--Sobic002G338500 Sobic004G237800 Sobic004G237800 Sobic002G336600--Sobic004G237800 Sobic007G074000 Sobic007G074000 Sobic002G336600--Sobic007G074000 Sobic002G336600--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic002G336600--Sobic004G229800 Sobic003G369100 Sobic003G369100 Sobic002G336600--Sobic003G369100 Sobic001G435000 Sobic001G435000 Sobic002G336600--Sobic001G435000 Sobic002G336600--Sobic002G140400 Sobic004G141200 Sobic004G141200 Sobic002G336600--Sobic004G141200 Sobic003G345100 Sobic003G345100 Sobic002G336600--Sobic003G345100 Sobic001G138600 Sobic001G138600 Sobic001G477600--Sobic001G138600 Sobic001G477600--Sobic001G112200 Sobic001G477600--Sobic003G369100 Sobic001G477600--Sobic002G336600 Sobic003G382800 Sobic003G382800 Sobic001G477600--Sobic003G382800 Sobic001G477600--Sobic007G074000 Sobic001G477600--Sobic003G345100 Sobic005G099000 Sobic005G099000 Sobic001G477600--Sobic005G099000 Sobic001G477600--Sobic004G141200 Sobic004G208700--Sobic009G234100 Sobic004G208700--Sobic001G435000 Sobic004G208700--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic004G208700--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic004G208700--Sobic008G050600 Sobic009G164600 Sobic009G164600 Sobic004G208700--Sobic009G164600 Sobic009G159400 Sobic009G159400 Sobic004G208700--Sobic009G159400 Sobic005G063100 Sobic005G063100 Sobic004G208700--Sobic005G063100 Sobic007G155000 Sobic007G155000 Sobic004G208700--Sobic007G155000 Sobic010G176600 Sobic010G176600 Sobic009G070400--Sobic010G176600 Sobic009G070400--Sobic001G423800 Sobic002G393000 Sobic002G393000 Sobic009G070400--Sobic002G393000 Sobic009G070400--Sobic008G136400 Sobic004G301000 Sobic004G301000 Sobic009G070400--Sobic004G301000 Sobic009G070400--Sobic006G158600 Sobic009G070400--Sobic003G286600 Sobic009G070400--Sobic002G140400 Sobic009G070400--Sobic001G038900 Sobic001G018300 Sobic001G018300 Sobic002G192000--Sobic001G018300 Sobic002G192000--Sobic001G367600 Sobic001G231400 Sobic001G231400 Sobic002G192000--Sobic001G231400 Sobic002G192000--Sobic004G243100 Sobic002G192000--Sobic006G158600 Sobic001G318700 Sobic001G318700 Sobic002G192000--Sobic001G318700 Sobic002G192000--Sobic001G038900 Sobic002G192000--Sobic002G140400 Sobic002G192000--Sobic001G423800
Octagon: transcription factors


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