Gene annotation
Transcriptome id Sobic.003G303100.1
Synonym ROPGEF11, ATROPGEF11, PIRF1, Sb03g035200
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
dynein light chain type 1 domain containing protein, expressed
UniProt A0A1B6Q668
Pfam PF01221
Panther DB PTHR11886 PTHR11886:SF47
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT1G52240 : RHO guanyl-nucleotide exchange factor 11
RAP-DB (Rice) LOC_Os01g55510.1 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027491
Brachypodium KQK09837
Barley HORVU3Hr1G073190.1 , HORVU3Hr1G073190.2
Wheat TraesCS3A02G305600 , TraesCS2B02G427400 , TraesCS2B02G143000 , TraesCS3B02G330900 , TraesCS1D02G203800 , TraesCS2A02G245600 , TraesCS1B02G110900 , TraesCS5B02G340700 , TraesCS7A02G284100 , TraesCS3D02G296300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
2 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.004G189400 expressed protein -
4 Sobic.003G382600 ARGOS, putative, expressed -
5 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.004G148200 Cupin domain containing protein, expressed -
8 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
9 Sobic.005G063100 expressed protein -
10 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
11 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
14 Sobic.002G251000 expressed protein -
15 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
16 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
17 Sobic.009G145500 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.009G151600 AP2 domain containing protein, expressed -
19 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
20 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease


Gene co-expression network
sample Sobic003G303100 Sobic003G303100 Sobic002G055700 Sobic002G055700 Sobic003G303100--Sobic002G055700 Sobic001G318700 Sobic001G318700 Sobic003G303100--Sobic001G318700 Sobic004G189400 Sobic004G189400 Sobic003G303100--Sobic004G189400 Sobic003G382600 Sobic003G382600 Sobic003G303100--Sobic003G382600 Sobic004G237800 Sobic004G237800 Sobic003G303100--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic003G303100--Sobic003G426400 Sobic004G148200 Sobic004G148200 Sobic003G303100--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic003G303100--Sobic005G029200 Sobic005G063100 Sobic005G063100 Sobic003G303100--Sobic005G063100 Sobic002G055700--Sobic003G303100 Sobic002G055700--Sobic003G382600 Sobic002G055700--Sobic004G237800 Sobic002G055700--Sobic003G426400 Sobic002G353900 Sobic002G353900 Sobic002G055700--Sobic002G353900 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic002G055700--Sobic002G338500 Sobic001G367600 Sobic001G367600 Sobic002G055700--Sobic001G367600 Sobic001G112200 Sobic001G112200 Sobic001G318700--Sobic001G112200 Sobic001G018300 Sobic001G018300 Sobic001G318700--Sobic001G018300 Sobic004G243100 Sobic004G243100 Sobic001G318700--Sobic004G243100 Sobic002G192000 Sobic002G192000 Sobic001G318700--Sobic002G192000 Sobic001G318700--Sobic003G303100 Sobic002G251000 Sobic002G251000 Sobic001G318700--Sobic002G251000 Sobic001G140900 Sobic001G140900 Sobic001G318700--Sobic001G140900 Sobic006G075400 Sobic006G075400 Sobic001G318700--Sobic006G075400 Sobic001G481100 Sobic001G481100 Sobic001G318700--Sobic001G481100 Sobic002G140400 Sobic002G140400 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic008G050600 Sobic008G050600 Sobic004G189400--Sobic008G050600 Sobic004G189400--Sobic004G237800 Sobic004G189400--Sobic003G382600 Sobic006G099900 Sobic006G099900 Sobic004G189400--Sobic006G099900 Sobic008G136400 Sobic008G136400 Sobic004G189400--Sobic008G136400 Sobic004G189400--Sobic005G029200 Sobic003G382600--Sobic002G055700 Sobic003G382600--Sobic004G189400 Sobic003G382600--Sobic002G338500 Sobic003G382600--Sobic002G353900 Sobic003G382600--Sobic003G303100 Sobic003G382600--Sobic004G237800 Sobic003G382600--Sobic005G091500 Sobic003G382600--Sobic008G050600 Sobic003G043600 Sobic003G043600 Sobic003G382600--Sobic003G043600 Sobic007G074000 Sobic007G074000 Sobic004G237800--Sobic007G074000 Sobic004G321300 Sobic004G321300 Sobic004G237800--Sobic004G321300 Sobic002G336600 Sobic002G336600 Sobic004G237800--Sobic002G336600 Sobic004G237800--Sobic004G189400 Sobic004G237800--Sobic002G055700 Sobic004G237800--Sobic002G140400 Sobic004G237800--Sobic005G091500 Sobic004G237800--Sobic001G112200 Sobic004G237800--Sobic005G063100 Sobic003G426400--Sobic002G055700 Sobic003G426400--Sobic003G303100 Sobic009G111000 Sobic009G111000 Sobic003G426400--Sobic009G111000 Sobic003G426400--Sobic001G367600 Sobic003G426400--Sobic003G043600 Sobic003G426400--Sobic004G237800 Sobic003G426400--Sobic005G063100 Sobic006G141700 Sobic006G141700 Sobic003G426400--Sobic006G141700 Sobic004G203700 Sobic004G203700 Sobic003G426400--Sobic004G203700 Sobic004G148200--Sobic005G029200 Sobic004G148200--Sobic002G055700 Sobic004G189500 Sobic004G189500 Sobic004G148200--Sobic004G189500 Sobic007G227300 Sobic007G227300 Sobic004G148200--Sobic007G227300 Sobic004G148200--Sobic004G189400 Sobic004G148200--Sobic003G303100 Sobic006G268800 Sobic006G268800 Sobic004G148200--Sobic006G268800 Sobic009G145500 Sobic009G145500 Sobic004G148200--Sobic009G145500 Sobic003G200700 Sobic003G200700 Sobic004G148200--Sobic003G200700 Sobic005G029200--Sobic004G189400 Sobic005G029200--Sobic004G148200 Sobic003G297600 Sobic003G297600 Sobic005G029200--Sobic003G297600 Sobic010G213700 Sobic010G213700 Sobic005G029200--Sobic010G213700 Sobic005G029200--Sobic002G055700 Sobic005G029200--Sobic003G303100 Sobic009G077800 Sobic009G077800 Sobic005G029200--Sobic009G077800 Sobic009G139400 Sobic009G139400 Sobic005G029200--Sobic009G139400 Sobic001G423800 Sobic001G423800 Sobic005G029200--Sobic001G423800 Sobic005G063100--Sobic008G050600 Sobic003G345100 Sobic003G345100 Sobic005G063100--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic005G063100--Sobic003G286600 Sobic005G063100--Sobic001G140900 Sobic005G099000 Sobic005G099000 Sobic005G063100--Sobic005G099000 Sobic009G234100 Sobic009G234100 Sobic005G063100--Sobic009G234100 Sobic005G063100--Sobic005G091500 Sobic004G208700 Sobic004G208700 Sobic005G063100--Sobic004G208700 Sobic001G435000 Sobic001G435000 Sobic005G063100--Sobic001G435000
Octagon: transcription factors


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