Gene annotation
Transcriptome id Sobic.005G029200.2,Sobic.005G029200.3
Synonym Sb05g002460
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
calmodulin-like protein 1, putative, expressed
UniProt A0A1B6PPU8
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF590
NCBI CDD -
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10190 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os12g04360.1 : calmodulin-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a026006 , Zm00025a013083
Brachypodium PNT73593
Barley HORVU3Hr1G106950.2 , HORVU3Hr1G106950.3 , HORVU3Hr1G106950.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G189400 expressed protein -
2 Sobic.004G148200 Cupin domain containing protein, expressed -
3 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
4 Sobic.010G213700 GDU1, putative, expressed -
5 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
7 Sobic.009G077800 expressed protein -
8 Sobic.009G139400 expressed protein -
9 Sobic.001G423800 DNA binding protein, putative, expressed -
10 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.003G382600 ARGOS, putative, expressed -
12 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
13 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
14 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.002G314700 receptor-like protein kinase, putative, expressed -
17 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
18 Sobic.008G136400 expressed protein -
19 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
20 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic005G029200 Sobic005G029200 Sobic004G189400 Sobic004G189400 Sobic005G029200--Sobic004G189400 Sobic004G148200 Sobic004G148200 Sobic005G029200--Sobic004G148200 Sobic003G297600 Sobic003G297600 Sobic005G029200--Sobic003G297600 Sobic010G213700 Sobic010G213700 Sobic005G029200--Sobic010G213700 Sobic002G055700 Sobic002G055700 Sobic005G029200--Sobic002G055700 Sobic003G303100 Sobic003G303100 Sobic005G029200--Sobic003G303100 Sobic009G077800 Sobic009G077800 Sobic005G029200--Sobic009G077800 Sobic009G139400 Sobic009G139400 Sobic005G029200--Sobic009G139400 Sobic001G423800 Sobic001G423800 Sobic005G029200--Sobic001G423800 Sobic002G140400 Sobic002G140400 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic008G050600 Sobic008G050600 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic006G099900 Sobic006G099900 Sobic004G189400--Sobic006G099900 Sobic008G136400 Sobic008G136400 Sobic004G189400--Sobic008G136400 Sobic004G189400--Sobic005G029200 Sobic004G148200--Sobic005G029200 Sobic004G148200--Sobic002G055700 Sobic004G189500 Sobic004G189500 Sobic004G148200--Sobic004G189500 Sobic007G227300 Sobic007G227300 Sobic004G148200--Sobic007G227300 Sobic004G148200--Sobic004G189400 Sobic004G148200--Sobic003G303100 Sobic006G268800 Sobic006G268800 Sobic004G148200--Sobic006G268800 Sobic009G145500 Sobic009G145500 Sobic004G148200--Sobic009G145500 Sobic003G200700 Sobic003G200700 Sobic004G148200--Sobic003G200700 Sobic003G297600--Sobic009G077800 Sobic003G297600--Sobic009G139400 Sobic001G070800 Sobic001G070800 Sobic003G297600--Sobic001G070800 Sobic003G297600--Sobic005G029200 Sobic003G297600--Sobic004G189400 Sobic003G297600--Sobic008G050600 Sobic001G317200 Sobic001G317200 Sobic003G297600--Sobic001G317200 Sobic003G297600--Sobic005G091500 Sobic003G297600--Sobic002G055700 Sobic010G213700--Sobic005G029200 Sobic002G366600 Sobic002G366600 Sobic010G213700--Sobic002G366600 Sobic001G119400 Sobic001G119400 Sobic010G213700--Sobic001G119400 Sobic010G213700--Sobic009G139400 Sobic010G213700--Sobic004G148200 Sobic010G213700--Sobic003G297600 Sobic002G415100 Sobic002G415100 Sobic010G213700--Sobic002G415100 Sobic010G213700--Sobic004G189400 Sobic003G280200 Sobic003G280200 Sobic010G213700--Sobic003G280200 Sobic002G055700--Sobic003G303100 Sobic002G055700--Sobic003G382600 Sobic002G055700--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic002G055700--Sobic003G426400 Sobic002G353900 Sobic002G353900 Sobic002G055700--Sobic002G353900 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic002G055700--Sobic002G338500 Sobic001G367600 Sobic001G367600 Sobic002G055700--Sobic001G367600 Sobic003G303100--Sobic002G055700 Sobic001G318700 Sobic001G318700 Sobic003G303100--Sobic001G318700 Sobic003G303100--Sobic004G189400 Sobic003G303100--Sobic003G382600 Sobic003G303100--Sobic004G237800 Sobic003G303100--Sobic003G426400 Sobic003G303100--Sobic004G148200 Sobic003G303100--Sobic005G029200 Sobic005G063100 Sobic005G063100 Sobic003G303100--Sobic005G063100 Sobic009G077800--Sobic003G297600 Sobic009G077800--Sobic009G139400 Sobic003G393700 Sobic003G393700 Sobic009G077800--Sobic003G393700 Sobic009G077800--Sobic001G070800 Sobic009G077800--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic009G077800--Sobic002G017800 Sobic009G077800--Sobic005G029200 Sobic001G325400 Sobic001G325400 Sobic009G077800--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic009G077800--Sobic007G087200 Sobic009G139400--Sobic009G077800 Sobic009G139400--Sobic003G297600 Sobic009G139400--Sobic001G119400 Sobic001G177800 Sobic001G177800 Sobic009G139400--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic009G139400--Sobic002G353900 Sobic009G139400--Sobic003G382600 Sobic009G139400--Sobic005G029200 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic001G423800--Sobic002G140400 Sobic001G038900 Sobic001G038900 Sobic001G423800--Sobic001G038900 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic001G423800--Sobic004G189400
Octagon: transcription factors


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