Gene annotation
Transcriptome id Sobic.003G280200.1
Synonym Sb03g033180
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5XIE0
Pfam -
Panther DB PTHR34278 PTHR34278:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g32670.1 : expressed protein
MaizeGDB (Corn) Zm00025a027751 , Zm00025a027747
Brachypodium KQK08298
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
2 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
3 Sobic.009G139400 expressed protein -
4 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
5 Sobic.009G077800 expressed protein -
6 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
7 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.002G004900 transporter family protein, putative, expressed -
9 Sobic.002G034800 - -
10 Sobic.010G156500 expressed protein -
11 Sobic.003G382600 ARGOS, putative, expressed -
12 Sobic.010G213700 GDU1, putative, expressed -
13 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
14 Sobic.001G070800 expressed protein -
15 Sobic.004G148200 Cupin domain containing protein, expressed -
16 Sobic.003G156200 cytochrome P450, putative, expressed -
17 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
18 Sobic.004G107700 expressed protein -
19 Sobic.003G252800 hypothetical protein -
20 Sobic.008G172600 ATCHX, putative, expressed -


Gene co-expression network
sample Sobic003G280200 Sobic003G280200 Sobic003G417700 Sobic003G417700 Sobic003G280200--Sobic003G417700 Sobic002G415100 Sobic002G415100 Sobic003G280200--Sobic002G415100 Sobic009G139400 Sobic009G139400 Sobic003G280200--Sobic009G139400 Sobic003G297600 Sobic003G297600 Sobic003G280200--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic003G280200--Sobic009G077800 Sobic005G029200 Sobic005G029200 Sobic003G280200--Sobic005G029200 Sobic003G364000 Sobic003G364000 Sobic003G280200--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic003G280200--Sobic002G004900 Sobic002G034800 Sobic002G034800 Sobic003G280200--Sobic002G034800 Sobic003G417700--Sobic003G280200 Sobic003G156200 Sobic003G156200 Sobic003G417700--Sobic003G156200 Sobic004G148200 Sobic004G148200 Sobic003G417700--Sobic004G148200 Sobic003G417700--Sobic005G029200 Sobic009G128700 Sobic009G128700 Sobic003G417700--Sobic009G128700 Sobic003G280100 Sobic003G280100 Sobic003G417700--Sobic003G280100 Sobic010G213700 Sobic010G213700 Sobic003G417700--Sobic010G213700 Sobic003G426000 Sobic003G426000 Sobic003G417700--Sobic003G426000 Sobic008G158100 Sobic008G158100 Sobic003G417700--Sobic008G158100 Sobic010G239300 Sobic010G239300 Sobic002G415100--Sobic010G239300 Sobic002G415100--Sobic003G280200 Sobic002G415100--Sobic009G128700 Sobic001G317200 Sobic001G317200 Sobic002G415100--Sobic001G317200 Sobic002G415100--Sobic003G297600 Sobic002G415100--Sobic010G213700 Sobic002G415100--Sobic002G034800 Sobic009G231000 Sobic009G231000 Sobic002G415100--Sobic009G231000 Sobic002G415100--Sobic003G156200 Sobic009G139400--Sobic009G077800 Sobic009G139400--Sobic003G297600 Sobic001G119400 Sobic001G119400 Sobic009G139400--Sobic001G119400 Sobic001G177800 Sobic001G177800 Sobic009G139400--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic002G353900 Sobic002G353900 Sobic009G139400--Sobic002G353900 Sobic003G382600 Sobic003G382600 Sobic009G139400--Sobic003G382600 Sobic009G139400--Sobic005G029200 Sobic003G297600--Sobic009G077800 Sobic003G297600--Sobic009G139400 Sobic001G070800 Sobic001G070800 Sobic003G297600--Sobic001G070800 Sobic003G297600--Sobic005G029200 Sobic004G189400 Sobic004G189400 Sobic003G297600--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic003G297600--Sobic008G050600 Sobic003G297600--Sobic001G317200 Sobic005G091500 Sobic005G091500 Sobic003G297600--Sobic005G091500 Sobic002G055700 Sobic002G055700 Sobic003G297600--Sobic002G055700 Sobic009G077800--Sobic003G297600 Sobic009G077800--Sobic009G139400 Sobic003G393700 Sobic003G393700 Sobic009G077800--Sobic003G393700 Sobic009G077800--Sobic001G070800 Sobic009G077800--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic009G077800--Sobic002G017800 Sobic009G077800--Sobic005G029200 Sobic001G325400 Sobic001G325400 Sobic009G077800--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic009G077800--Sobic007G087200 Sobic005G029200--Sobic004G189400 Sobic005G029200--Sobic004G148200 Sobic005G029200--Sobic003G297600 Sobic005G029200--Sobic010G213700 Sobic005G029200--Sobic002G055700 Sobic003G303100 Sobic003G303100 Sobic005G029200--Sobic003G303100 Sobic005G029200--Sobic009G077800 Sobic005G029200--Sobic009G139400 Sobic001G423800 Sobic001G423800 Sobic005G029200--Sobic001G423800 Sobic010G088700 Sobic010G088700 Sobic003G364000--Sobic010G088700 Sobic009G217700 Sobic009G217700 Sobic003G364000--Sobic009G217700 Sobic010G156500 Sobic010G156500 Sobic003G364000--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic003G364000--Sobic003G364300 Sobic003G364000--Sobic003G280200 Sobic010G259500 Sobic010G259500 Sobic003G364000--Sobic010G259500 Sobic005G213500 Sobic005G213500 Sobic003G364000--Sobic005G213500 Sobic003G364000--Sobic002G034800 Sobic003G364000--Sobic003G382600 Sobic001G318500 Sobic001G318500 Sobic002G004900--Sobic001G318500 Sobic008G172600 Sobic008G172600 Sobic002G004900--Sobic008G172600 Sobic002G004900--Sobic002G017800 Sobic002G004900--Sobic003G280200 Sobic001G503100 Sobic001G503100 Sobic002G004900--Sobic001G503100 Sobic002G302500 Sobic002G302500 Sobic002G004900--Sobic002G302500 Sobic009G009600 Sobic009G009600 Sobic002G004900--Sobic009G009600 Sobic002G004900--Sobic001G325400 Sobic005G011200 Sobic005G011200 Sobic002G004900--Sobic005G011200 Sobic002G034800--Sobic010G066700 Sobic002G034800--Sobic009G139400 Sobic004G107700 Sobic004G107700 Sobic002G034800--Sobic004G107700 Sobic002G034800--Sobic003G280200 Sobic002G034800--Sobic009G077800 Sobic003G255200 Sobic003G255200 Sobic002G034800--Sobic003G255200 Sobic002G034800--Sobic001G119400 Sobic009G183400 Sobic009G183400 Sobic002G034800--Sobic009G183400 Sobic010G259600 Sobic010G259600 Sobic002G034800--Sobic010G259600
Octagon: transcription factors


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