Gene annotation
Transcriptome id Sobic.009G128700.1
Synonym Sb09g019530
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
expressed protein
UniProt C5YXL1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os05g32860.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
2 Sobic.003G252800 hypothetical protein -
3 Sobic.003G426300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
5 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
6 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
7 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
13 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
14 Sobic.003G430600 OsCML19 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
16 Sobic.004G148200 Cupin domain containing protein, expressed -
17 Sobic.003G280100 expressed protein -
18 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
20 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -


Gene co-expression network
sample Sobic009G128700 Sobic009G128700 Sobic010G084400 Sobic010G084400 Sobic009G128700--Sobic010G084400 Sobic003G252800 Sobic003G252800 Sobic009G128700--Sobic003G252800 Sobic003G426300 Sobic003G426300 Sobic009G128700--Sobic003G426300 Sobic005G101800 Sobic005G101800 Sobic009G128700--Sobic005G101800 Sobic010G239300 Sobic010G239300 Sobic009G128700--Sobic010G239300 Sobic002G415100 Sobic002G415100 Sobic009G128700--Sobic002G415100 Sobic003G426000 Sobic003G426000 Sobic009G128700--Sobic003G426000 Sobic006G099900 Sobic006G099900 Sobic009G128700--Sobic006G099900 Sobic003G280200 Sobic003G280200 Sobic009G128700--Sobic003G280200 Sobic010G084400--Sobic003G252800 Sobic010G084400--Sobic005G101800 Sobic010G084400--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic010G084400--Sobic001G317200 Sobic010G084400--Sobic009G128700 Sobic007G227300 Sobic007G227300 Sobic010G084400--Sobic007G227300 Sobic010G117900 Sobic010G117900 Sobic010G084400--Sobic010G117900 Sobic010G084400--Sobic010G239300 Sobic004G189400 Sobic004G189400 Sobic010G084400--Sobic004G189400 Sobic003G252800--Sobic006G099900 Sobic003G252800--Sobic010G084400 Sobic001G348700 Sobic001G348700 Sobic003G252800--Sobic001G348700 Sobic003G252800--Sobic001G317200 Sobic003G252800--Sobic005G101800 Sobic003G252800--Sobic007G227300 Sobic003G252800--Sobic010G117900 Sobic003G252800--Sobic009G128700 Sobic004G221500 Sobic004G221500 Sobic003G252800--Sobic004G221500 Sobic003G426300--Sobic005G101800 Sobic003G426300--Sobic009G128700 Sobic003G426300--Sobic010G084400 Sobic003G426300--Sobic003G426000 Sobic003G426300--Sobic003G252800 Sobic001G063000 Sobic001G063000 Sobic003G426300--Sobic001G063000 Sobic003G426300--Sobic010G117900 Sobic003G426300--Sobic007G227300 Sobic001G400800 Sobic001G400800 Sobic003G426300--Sobic001G400800 Sobic005G101800--Sobic010G084400 Sobic005G101800--Sobic010G117900 Sobic005G101800--Sobic003G252800 Sobic005G101800--Sobic007G227300 Sobic005G101800--Sobic001G317200 Sobic005G101800--Sobic003G426300 Sobic005G101800--Sobic006G099900 Sobic005G101800--Sobic009G128700 Sobic005G101800--Sobic001G400800 Sobic010G239300--Sobic002G415100 Sobic010G239300--Sobic001G317200 Sobic010G239300--Sobic009G128700 Sobic010G239300--Sobic010G084400 Sobic002G416600 Sobic002G416600 Sobic010G239300--Sobic002G416600 Sobic003G087300 Sobic003G087300 Sobic010G239300--Sobic003G087300 Sobic007G145600 Sobic007G145600 Sobic010G239300--Sobic007G145600 Sobic010G239300--Sobic006G099900 Sobic010G239300--Sobic005G101800 Sobic002G415100--Sobic010G239300 Sobic002G415100--Sobic003G280200 Sobic002G415100--Sobic009G128700 Sobic002G415100--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic002G415100--Sobic003G297600 Sobic010G213700 Sobic010G213700 Sobic002G415100--Sobic010G213700 Sobic002G034800 Sobic002G034800 Sobic002G415100--Sobic002G034800 Sobic009G231000 Sobic009G231000 Sobic002G415100--Sobic009G231000 Sobic003G156200 Sobic003G156200 Sobic002G415100--Sobic003G156200 Sobic002G195400 Sobic002G195400 Sobic003G426000--Sobic002G195400 Sobic003G426000--Sobic009G128700 Sobic007G067600 Sobic007G067600 Sobic003G426000--Sobic007G067600 Sobic004G304300 Sobic004G304300 Sobic003G426000--Sobic004G304300 Sobic003G430600 Sobic003G430600 Sobic003G426000--Sobic003G430600 Sobic003G426000--Sobic003G426300 Sobic003G426000--Sobic005G101800 Sobic001G319700 Sobic001G319700 Sobic003G426000--Sobic001G319700 Sobic003G200700 Sobic003G200700 Sobic003G426000--Sobic003G200700 Sobic006G099900--Sobic007G227300 Sobic006G099900--Sobic003G252800 Sobic006G099900--Sobic001G317200 Sobic003G286600 Sobic003G286600 Sobic006G099900--Sobic003G286600 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic006G099900--Sobic008G050600 Sobic005G091500 Sobic005G091500 Sobic006G099900--Sobic005G091500 Sobic006G277600 Sobic006G277600 Sobic006G099900--Sobic006G277600 Sobic003G417700 Sobic003G417700 Sobic003G280200--Sobic003G417700 Sobic003G280200--Sobic002G415100 Sobic009G139400 Sobic009G139400 Sobic003G280200--Sobic009G139400 Sobic003G280200--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic003G280200--Sobic009G077800 Sobic005G029200 Sobic005G029200 Sobic003G280200--Sobic005G029200 Sobic003G364000 Sobic003G364000 Sobic003G280200--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic003G280200--Sobic002G004900 Sobic003G280200--Sobic002G034800
Octagon: transcription factors


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