Gene annotation
Transcriptome id Sobic.004G304300.1
Synonym Sb04g033740
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5XSQ5
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF376
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G61220 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g44950.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a032122
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G066932 - -
2 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
4 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.010G102300 expressed protein -
6 Sobic.007G067350 - -
7 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
9 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.010G035700 expressed protein -
11 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
12 Sobic.003G426300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.004G304100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
14 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.003G430600 OsCML19 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
16 Sobic.001G330500 polygalacturonase inhibitor 1 precursor, putative, expressed -
17 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.004G180301 - -
20 Sobic.007G135201 - -


Gene co-expression network
sample Sobic004G304300 Sobic004G304300 Sobic007G066932 Sobic007G066932 Sobic004G304300--Sobic007G066932 Sobic003G426100 Sobic003G426100 Sobic004G304300--Sobic003G426100 Sobic002G195400 Sobic002G195400 Sobic004G304300--Sobic002G195400 Sobic003G426000 Sobic003G426000 Sobic004G304300--Sobic003G426000 Sobic010G102300 Sobic010G102300 Sobic004G304300--Sobic010G102300 Sobic007G067350 Sobic007G067350 Sobic004G304300--Sobic007G067350 Sobic001G319700 Sobic001G319700 Sobic004G304300--Sobic001G319700 Sobic005G101800 Sobic005G101800 Sobic004G304300--Sobic005G101800 Sobic009G128700 Sobic009G128700 Sobic004G304300--Sobic009G128700 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G067600 Sobic007G067600 Sobic007G066932--Sobic007G067600 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic006G084600 Sobic006G084600 Sobic007G066932--Sobic006G084600 Sobic007G135201 Sobic007G135201 Sobic007G066932--Sobic007G135201 Sobic003G426100--Sobic007G066932 Sobic003G426100--Sobic002G195400 Sobic010G035700 Sobic010G035700 Sobic003G426100--Sobic010G035700 Sobic003G426100--Sobic010G102300 Sobic003G426100--Sobic007G067350 Sobic003G426100--Sobic004G304300 Sobic003G426100--Sobic001G319700 Sobic003G426100--Sobic007G135201 Sobic003G426100--Sobic007G067600 Sobic002G195400--Sobic007G067600 Sobic002G195400--Sobic001G319700 Sobic002G195400--Sobic003G426100 Sobic002G195400--Sobic007G066932 Sobic002G195400--Sobic010G102300 Sobic002G195400--Sobic003G426000 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic002G195400--Sobic004G304300 Sobic003G426000--Sobic002G195400 Sobic003G426000--Sobic009G128700 Sobic003G426000--Sobic007G067600 Sobic003G426000--Sobic004G304300 Sobic003G430600 Sobic003G430600 Sobic003G426000--Sobic003G430600 Sobic003G426300 Sobic003G426300 Sobic003G426000--Sobic003G426300 Sobic003G426000--Sobic005G101800 Sobic003G426000--Sobic001G319700 Sobic003G200700 Sobic003G200700 Sobic003G426000--Sobic003G200700 Sobic010G102300--Sobic001G319700 Sobic010G102300--Sobic002G195400 Sobic010G102300--Sobic010G035700 Sobic010G102300--Sobic007G066932 Sobic010G102300--Sobic003G426100 Sobic010G102300--Sobic007G067600 Sobic010G102300--Sobic007G067350 Sobic010G102300--Sobic004G304300 Sobic001G231600 Sobic001G231600 Sobic010G102300--Sobic001G231600 Sobic007G067350--Sobic007G066932 Sobic007G067350--Sobic002G195400 Sobic007G067350--Sobic003G426100 Sobic007G067350--Sobic006G084600 Sobic007G067350--Sobic010G102300 Sobic008G140300 Sobic008G140300 Sobic007G067350--Sobic008G140300 Sobic010G084300 Sobic010G084300 Sobic007G067350--Sobic010G084300 Sobic007G067350--Sobic001G319700 Sobic007G067350--Sobic010G035700 Sobic001G319700--Sobic010G102300 Sobic001G319700--Sobic002G195400 Sobic001G319700--Sobic007G067600 Sobic001G319700--Sobic003G426100 Sobic001G319700--Sobic007G066932 Sobic001G319700--Sobic010G035700 Sobic001G319700--Sobic007G067350 Sobic001G319700--Sobic003G426000 Sobic001G319700--Sobic004G304300 Sobic010G084400 Sobic010G084400 Sobic005G101800--Sobic010G084400 Sobic010G117900 Sobic010G117900 Sobic005G101800--Sobic010G117900 Sobic003G252800 Sobic003G252800 Sobic005G101800--Sobic003G252800 Sobic007G227300 Sobic007G227300 Sobic005G101800--Sobic007G227300 Sobic001G317200 Sobic001G317200 Sobic005G101800--Sobic001G317200 Sobic005G101800--Sobic003G426300 Sobic006G099900 Sobic006G099900 Sobic005G101800--Sobic006G099900 Sobic005G101800--Sobic009G128700 Sobic001G400800 Sobic001G400800 Sobic005G101800--Sobic001G400800 Sobic009G128700--Sobic010G084400 Sobic009G128700--Sobic003G252800 Sobic009G128700--Sobic003G426300 Sobic009G128700--Sobic005G101800 Sobic010G239300 Sobic010G239300 Sobic009G128700--Sobic010G239300 Sobic002G415100 Sobic002G415100 Sobic009G128700--Sobic002G415100 Sobic009G128700--Sobic003G426000 Sobic009G128700--Sobic006G099900 Sobic003G280200 Sobic003G280200 Sobic009G128700--Sobic003G280200
Octagon: transcription factors


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