Gene annotation
Transcriptome id Sobic.003G164800.1
Synonym ATGSTF13, Sb03g015070
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
glutathione S-transferase, putative, expressed
UniProt C5XKL4
Pfam PF00043 PF02798
Panther DB PTHR11260 PTHR11260:SF235
NCBI CDD KOG0867; Glutathione S-transferase
KEGG Orthology K00799; GST, glutathione S-transferase
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G62760 : Glutathione S-transferase family protein
RAP-DB (Rice) LOC_Os01g27210.1 : glutathione S-transferase, putative, expressed
MaizeGDB (Corn) Zm00025a027432
Brachypodium -
Barley HORVU1Hr1G021150.1 , HORVU1Hr1G021150.3 , HORVU1Hr1G021150.4 , HORVU1Hr1G021140.2 , HORVU1Hr1G021140.1 , HORVU1Hr1G021150.2
Wheat TraesCS1A02G102800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
2 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
3 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
4 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.010G102300 expressed protein -
8 Sobic.004G088551 - -
9 Sobic.001G495164 - -
10 Sobic.007G066932 - -
11 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
12 Sobic.001G317000 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.010G084300 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
14 Sobic.003G264400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
16 Sobic.002G139400 AP2 domain containing protein, expressed -
17 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
19 Sobic.007G067350 - -
20 Sobic.001G330500 polygalacturonase inhibitor 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G164800 Sobic003G164800 Sobic002G195400 Sobic002G195400 Sobic003G164800--Sobic002G195400 Sobic007G067600 Sobic007G067600 Sobic003G164800--Sobic007G067600 Sobic005G101800 Sobic005G101800 Sobic003G164800--Sobic005G101800 Sobic010G117900 Sobic010G117900 Sobic003G164800--Sobic010G117900 Sobic001G319700 Sobic001G319700 Sobic003G164800--Sobic001G319700 Sobic003G426000 Sobic003G426000 Sobic003G164800--Sobic003G426000 Sobic010G102300 Sobic010G102300 Sobic003G164800--Sobic010G102300 Sobic004G088551 Sobic004G088551 Sobic003G164800--Sobic004G088551 Sobic001G495164 Sobic001G495164 Sobic003G164800--Sobic001G495164 Sobic002G195400--Sobic007G067600 Sobic002G195400--Sobic001G319700 Sobic003G426100 Sobic003G426100 Sobic002G195400--Sobic003G426100 Sobic007G066932 Sobic007G066932 Sobic002G195400--Sobic007G066932 Sobic002G195400--Sobic010G102300 Sobic002G195400--Sobic003G426000 Sobic007G067350 Sobic007G067350 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic004G304300 Sobic004G304300 Sobic002G195400--Sobic004G304300 Sobic007G067600--Sobic002G195400 Sobic007G067600--Sobic007G066932 Sobic007G067600--Sobic001G319700 Sobic007G067600--Sobic010G102300 Sobic007G067600--Sobic005G101800 Sobic007G067600--Sobic010G117900 Sobic003G430600 Sobic003G430600 Sobic007G067600--Sobic003G430600 Sobic007G067600--Sobic003G426000 Sobic007G067600--Sobic001G495164 Sobic010G084400 Sobic010G084400 Sobic005G101800--Sobic010G084400 Sobic005G101800--Sobic010G117900 Sobic003G252800 Sobic003G252800 Sobic005G101800--Sobic003G252800 Sobic007G227300 Sobic007G227300 Sobic005G101800--Sobic007G227300 Sobic001G317200 Sobic001G317200 Sobic005G101800--Sobic001G317200 Sobic003G426300 Sobic003G426300 Sobic005G101800--Sobic003G426300 Sobic006G099900 Sobic006G099900 Sobic005G101800--Sobic006G099900 Sobic009G128700 Sobic009G128700 Sobic005G101800--Sobic009G128700 Sobic001G400800 Sobic001G400800 Sobic005G101800--Sobic001G400800 Sobic010G117900--Sobic005G101800 Sobic010G117900--Sobic003G252800 Sobic010G084700 Sobic010G084700 Sobic010G117900--Sobic010G084700 Sobic010G117900--Sobic007G227300 Sobic004G221500 Sobic004G221500 Sobic010G117900--Sobic004G221500 Sobic010G117900--Sobic010G084400 Sobic010G117900--Sobic007G067600 Sobic010G117900--Sobic002G195400 Sobic001G348700 Sobic001G348700 Sobic010G117900--Sobic001G348700 Sobic001G319700--Sobic010G102300 Sobic001G319700--Sobic002G195400 Sobic001G319700--Sobic007G067600 Sobic001G319700--Sobic003G426100 Sobic001G319700--Sobic007G066932 Sobic010G035700 Sobic010G035700 Sobic001G319700--Sobic010G035700 Sobic001G319700--Sobic007G067350 Sobic001G319700--Sobic003G426000 Sobic001G319700--Sobic004G304300 Sobic003G426000--Sobic002G195400 Sobic003G426000--Sobic009G128700 Sobic003G426000--Sobic007G067600 Sobic003G426000--Sobic004G304300 Sobic003G426000--Sobic003G430600 Sobic003G426000--Sobic003G426300 Sobic003G426000--Sobic005G101800 Sobic003G426000--Sobic001G319700 Sobic003G200700 Sobic003G200700 Sobic003G426000--Sobic003G200700 Sobic010G102300--Sobic001G319700 Sobic010G102300--Sobic002G195400 Sobic010G102300--Sobic010G035700 Sobic010G102300--Sobic007G066932 Sobic010G102300--Sobic003G426100 Sobic010G102300--Sobic007G067600 Sobic010G102300--Sobic007G067350 Sobic010G102300--Sobic004G304300 Sobic001G231600 Sobic001G231600 Sobic010G102300--Sobic001G231600 Sobic004G088551--Sobic001G317000 Sobic004G088551--Sobic002G195400 Sobic004G088551--Sobic005G101800 Sobic004G088551--Sobic007G067600 Sobic004G088551--Sobic010G117900 Sobic004G088551--Sobic001G317200 Sobic001G423800 Sobic001G423800 Sobic004G088551--Sobic001G423800 Sobic007G061300 Sobic007G061300 Sobic004G088551--Sobic007G061300 Sobic004G112300 Sobic004G112300 Sobic004G088551--Sobic004G112300 Sobic001G495164--Sobic007G067600 Sobic001G495164--Sobic001G231600 Sobic001G330500 Sobic001G330500 Sobic001G495164--Sobic001G330500 Sobic001G495164--Sobic010G102300 Sobic001G495164--Sobic005G101800 Sobic001G495164--Sobic002G195400 Sobic001G495164--Sobic010G117900 Sobic001G495164--Sobic001G319700 Sobic001G495164--Sobic003G164800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.