Gene annotation
| Transcriptome id | Sobic.007G067600.1 |
|---|---|
| Synonym | Sb07g005350 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) Cupin domain containing protein, expressed |
| UniProt | C5YIB8 |
| Pfam | PF07883 |
| Panther DB | PTHR31238 PTHR31238:SF33 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G39110 : RmlC-like cupins superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os12g05860.1 : Cupin domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a029969 , Zm00025a029970 , Zm00025a029971 , Zm00025a029972 , Zm00025a029973 , Zm00025a029974 , Zm00025a029975 |
| Brachypodium | - |
| Barley | - |
| Wheat | TraesCS3D02G011000 , TraesCS3A02G012400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G195400 | "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 2 | Sobic.007G066932 | - | - |
| 3 | Sobic.001G319700 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 4 | Sobic.010G102300 | expressed protein | - |
| 5 | Sobic.005G101800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed | - |
| 6 | Sobic.010G117900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 7 | Sobic.003G430600 | OsCML19 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 8 | Sobic.003G426000 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 9 | Sobic.001G495164 | - | - |
| 10 | Sobic.007G067350 | - | - |
| 11 | Sobic.001G231600 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 12 | Sobic.001G317000 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 13 | Sobic.007G135201 | - | - |
| 14 | Sobic.004G088551 | - | - |
| 15 | Sobic.003G426100 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 16 | Sobic.001G330500 | polygalacturonase inhibitor 1 precursor, putative, expressed | - |
| 17 | Sobic.004G216600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 18 | Sobic.007G227300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 19 | Sobic.001G319600 | Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 20 | Sobic.010G084300 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
Gene co-expression network
Octagon: transcription factors
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