Gene annotation
Transcriptome id Sobic.010G084300.1
Synonym 12-oxyphytodienoic acid reductase, Sb10g007300, OPR2, OPR1, ATOPR2
Functional annotation highly upregulated during chilling in a chilling tolerant sorghum NSG (PubMedID : 29293808)
12-oxophytodienoate reductase, putative, expressed
UniProt C5Z6J5
Pfam PF00724
Panther DB PTHR22893 PTHR22893:SF44
NCBI CDD KOG0134; NADH:flavin oxidoreductase/12-oxophytodienoate reductase
KEGG Orthology K05894; 12-oxophytodienoic acid reductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0010181FMN binding


Orthologs (automatic annotation)
TAIR AT1G76690 : 12-oxophytodienoate reductase 2
RAP-DB (Rice) LOC_Os06g11210.1 : 12-oxophytodienoate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a042525 , Zm00025a049545 , Zm00025a049553
Brachypodium PNT60498 , KQK12771 , KQJ81455 , KQK07508
Barley HORVU7Hr1G036070.19 , HORVU7Hr1G036070.18 , HORVU7Hr1G036070.15 , HORVU7Hr1G036070.14 , HORVU2Hr1G004230.6 , HORVU2Hr1G004230.5 , HORVU2Hr1G004230.1 , HORVU7Hr1G118010.4 , HORVU7Hr1G118010.1 , HORVU7Hr1G118010.2 , HORVU7Hr1G036070.2 , HORVU7Hr1G036070.5 , HORVU7Hr1G036060.2 , HORVU7Hr1G036060.3 , HORVU7Hr1G036060.1 , HORVU1Hr1G001960.2 , HORVU1Hr1G001960.1 , HORVU1Hr1G001950.2 , HORVU1Hr1G001950.3 , HORVU1Hr1G001950.1 , HORVU1Hr1G001950.4
Wheat TraesCS7A02G174700 , TraesCS2D02G028600 , TraesCS7D02G175800 , TraesCS7B02G079300 , TraesCS2A02G026600 , TraesCS4B02G048500 , TraesCS1D02G013400 , TraesCS2B02G040000 , TraesCS1A02G217700 , TraesCS7D02G175700 , TraesCS7D02G175700 , TraesCS1D02G219500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G067350 - -
2 Sobic.003G430600 OsCML19 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
3 Sobic.006G084600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
4 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
5 Sobic.007G066932 - -
6 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.007G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
8 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
9 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
10 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
13 Sobic.003G264400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.010G211900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
16 Sobic.010G042500 expressed protein -
17 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
18 Sobic.008G063400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G403000 expressed protein -
20 Sobic.001G402200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed -


Gene co-expression network
sample Sobic010G084300 Sobic010G084300 Sobic007G067350 Sobic007G067350 Sobic010G084300--Sobic007G067350 Sobic003G430600 Sobic003G430600 Sobic010G084300--Sobic003G430600 Sobic006G084600 Sobic006G084600 Sobic010G084300--Sobic006G084600 Sobic003G200700 Sobic003G200700 Sobic010G084300--Sobic003G200700 Sobic007G066932 Sobic007G066932 Sobic010G084300--Sobic007G066932 Sobic007G227300 Sobic007G227300 Sobic010G084300--Sobic007G227300 Sobic007G067400 Sobic007G067400 Sobic010G084300--Sobic007G067400 Sobic009G240600 Sobic009G240600 Sobic010G084300--Sobic009G240600 Sobic007G067600 Sobic007G067600 Sobic010G084300--Sobic007G067600 Sobic007G067350--Sobic007G066932 Sobic002G195400 Sobic002G195400 Sobic007G067350--Sobic002G195400 Sobic003G426100 Sobic003G426100 Sobic007G067350--Sobic003G426100 Sobic007G067350--Sobic006G084600 Sobic010G102300 Sobic010G102300 Sobic007G067350--Sobic010G102300 Sobic008G140300 Sobic008G140300 Sobic007G067350--Sobic008G140300 Sobic007G067350--Sobic010G084300 Sobic001G319700 Sobic001G319700 Sobic007G067350--Sobic001G319700 Sobic010G035700 Sobic010G035700 Sobic007G067350--Sobic010G035700 Sobic003G430600--Sobic007G067600 Sobic003G430600--Sobic007G227300 Sobic003G426000 Sobic003G426000 Sobic003G430600--Sobic003G426000 Sobic003G430600--Sobic010G084300 Sobic003G430600--Sobic007G066932 Sobic003G430600--Sobic002G195400 Sobic005G101800 Sobic005G101800 Sobic003G430600--Sobic005G101800 Sobic009G128700 Sobic009G128700 Sobic003G430600--Sobic009G128700 Sobic006G099900 Sobic006G099900 Sobic003G430600--Sobic006G099900 Sobic004G221500 Sobic004G221500 Sobic006G084600--Sobic004G221500 Sobic006G084600--Sobic007G067350 Sobic007G155100 Sobic007G155100 Sobic006G084600--Sobic007G155100 Sobic003G317100 Sobic003G317100 Sobic006G084600--Sobic003G317100 Sobic003G437200 Sobic003G437200 Sobic006G084600--Sobic003G437200 Sobic006G084600--Sobic007G066932 Sobic001G348700 Sobic001G348700 Sobic006G084600--Sobic001G348700 Sobic006G084600--Sobic010G084300 Sobic001G231600 Sobic001G231600 Sobic006G084600--Sobic001G231600 Sobic003G200700--Sobic007G227300 Sobic006G268800 Sobic006G268800 Sobic003G200700--Sobic006G268800 Sobic010G211900 Sobic010G211900 Sobic003G200700--Sobic010G211900 Sobic004G148200 Sobic004G148200 Sobic003G200700--Sobic004G148200 Sobic003G264400 Sobic003G264400 Sobic003G200700--Sobic003G264400 Sobic003G200700--Sobic006G099900 Sobic001G231400 Sobic001G231400 Sobic003G200700--Sobic001G231400 Sobic003G200700--Sobic005G101800 Sobic004G243100 Sobic004G243100 Sobic003G200700--Sobic004G243100 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G066932--Sobic007G067600 Sobic004G304300 Sobic004G304300 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic007G066932--Sobic006G084600 Sobic007G135201 Sobic007G135201 Sobic007G066932--Sobic007G135201 Sobic007G227300--Sobic006G099900 Sobic007G227300--Sobic003G200700 Sobic001G400800 Sobic001G400800 Sobic007G227300--Sobic001G400800 Sobic003G252800 Sobic003G252800 Sobic007G227300--Sobic003G252800 Sobic007G227300--Sobic006G268800 Sobic006G277600 Sobic006G277600 Sobic007G227300--Sobic006G277600 Sobic007G227300--Sobic004G148200 Sobic007G227300--Sobic009G240600 Sobic005G206601 Sobic005G206601 Sobic007G227300--Sobic005G206601 Sobic002G184200 Sobic002G184200 Sobic007G067400--Sobic002G184200 Sobic010G084100 Sobic010G084100 Sobic007G067400--Sobic010G084100 Sobic007G067400--Sobic004G221500 Sobic007G067400--Sobic010G084300 Sobic007G067400--Sobic006G084600 Sobic005G045900 Sobic005G045900 Sobic007G067400--Sobic005G045900 Sobic007G067400--Sobic008G140300 Sobic007G067400--Sobic001G348700 Sobic007G067400--Sobic007G155100 Sobic001G481400 Sobic001G481400 Sobic009G240600--Sobic001G481400 Sobic009G240600--Sobic007G227300 Sobic001G231700 Sobic001G231700 Sobic009G240600--Sobic001G231700 Sobic006G103000 Sobic006G103000 Sobic009G240600--Sobic006G103000 Sobic001G500000 Sobic001G500000 Sobic009G240600--Sobic001G500000 Sobic002G287100 Sobic002G287100 Sobic009G240600--Sobic002G287100 Sobic001G476500 Sobic001G476500 Sobic009G240600--Sobic001G476500 Sobic003G417800 Sobic003G417800 Sobic009G240600--Sobic003G417800 Sobic001G192200 Sobic001G192200 Sobic009G240600--Sobic001G192200 Sobic007G067600--Sobic002G195400 Sobic007G067600--Sobic007G066932 Sobic007G067600--Sobic001G319700 Sobic007G067600--Sobic010G102300 Sobic007G067600--Sobic005G101800 Sobic010G117900 Sobic010G117900 Sobic007G067600--Sobic010G117900 Sobic007G067600--Sobic003G430600 Sobic007G067600--Sobic003G426000 Sobic001G495164 Sobic001G495164 Sobic007G067600--Sobic001G495164
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.