Gene annotation
Transcriptome id Sobic.006G084600.1
Synonym Sb06g017100, BAT1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
amino acid permease family protein, putative, expressed
UniProt C5Y8Q3
Pfam PF00324
Panther DB PTHR11785 PTHR11785:SF370
NCBI CDD KOG1289; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT2G01170 : bidirectional amino acid transporter 1
RAP-DB (Rice) LOC_Os04g35540.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028664 , Zm00025a056091
Brachypodium KQK08653 , KQJ82693 , PNT72362 , PNT72363 , PNT72361
Barley HORVU2Hr1G076060.4 , HORVU2Hr1G076060.3 , HORVU2Hr1G076060.2 , HORVU2Hr1G076060.1 , HORVU2Hr1G076060.7 , HORVU2Hr1G076060.6 , HORVU2Hr1G076060.5
Wheat TraesCS3A02G217200 , TraesCS2B02G322600 , TraesCS3D02G219100 , TraesCS2A02G305900 , TraesCS2D02G304300 , TraesCS3B02G247500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
2 Sobic.007G067350 - -
3 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
4 Sobic.003G317100 expressed protein -
5 Sobic.003G437200 sulfotransferase domain containing protein, expressed -
6 Sobic.007G066932 - -
7 Sobic.001G348700 - -
8 Sobic.010G084300 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
9 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
10 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.003G240600 VQ domain containing protein, putative, expressed -
12 Sobic.003G252800 hypothetical protein -
13 Sobic.001G423800 DNA binding protein, putative, expressed -
14 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
15 Sobic.001G365100 lipase, putative, expressed -
16 Sobic.001G487300 expressed protein -
17 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.005G045900 - -


Gene co-expression network
sample Sobic006G084600 Sobic006G084600 Sobic004G221500 Sobic004G221500 Sobic006G084600--Sobic004G221500 Sobic007G067350 Sobic007G067350 Sobic006G084600--Sobic007G067350 Sobic007G155100 Sobic007G155100 Sobic006G084600--Sobic007G155100 Sobic003G317100 Sobic003G317100 Sobic006G084600--Sobic003G317100 Sobic003G437200 Sobic003G437200 Sobic006G084600--Sobic003G437200 Sobic007G066932 Sobic007G066932 Sobic006G084600--Sobic007G066932 Sobic001G348700 Sobic001G348700 Sobic006G084600--Sobic001G348700 Sobic010G084300 Sobic010G084300 Sobic006G084600--Sobic010G084300 Sobic001G231600 Sobic001G231600 Sobic006G084600--Sobic001G231600 Sobic010G084700 Sobic010G084700 Sobic004G221500--Sobic010G084700 Sobic004G221500--Sobic006G084600 Sobic004G221500--Sobic001G348700 Sobic002G184200 Sobic002G184200 Sobic004G221500--Sobic002G184200 Sobic001G423800 Sobic001G423800 Sobic004G221500--Sobic001G423800 Sobic010G084100 Sobic010G084100 Sobic004G221500--Sobic010G084100 Sobic003G252800 Sobic003G252800 Sobic004G221500--Sobic003G252800 Sobic003G286600 Sobic003G286600 Sobic004G221500--Sobic003G286600 Sobic010G117900 Sobic010G117900 Sobic004G221500--Sobic010G117900 Sobic007G067350--Sobic007G066932 Sobic002G195400 Sobic002G195400 Sobic007G067350--Sobic002G195400 Sobic003G426100 Sobic003G426100 Sobic007G067350--Sobic003G426100 Sobic007G067350--Sobic006G084600 Sobic010G102300 Sobic010G102300 Sobic007G067350--Sobic010G102300 Sobic008G140300 Sobic008G140300 Sobic007G067350--Sobic008G140300 Sobic007G067350--Sobic010G084300 Sobic001G319700 Sobic001G319700 Sobic007G067350--Sobic001G319700 Sobic010G035700 Sobic010G035700 Sobic007G067350--Sobic010G035700 Sobic007G155100--Sobic001G423800 Sobic001G402200 Sobic001G402200 Sobic007G155100--Sobic001G402200 Sobic001G018300 Sobic001G018300 Sobic007G155100--Sobic001G018300 Sobic001G365100 Sobic001G365100 Sobic007G155100--Sobic001G365100 Sobic004G243100 Sobic004G243100 Sobic007G155100--Sobic004G243100 Sobic007G155100--Sobic006G084600 Sobic010G066700 Sobic010G066700 Sobic007G155100--Sobic010G066700 Sobic007G155100--Sobic004G221500 Sobic007G155100--Sobic002G184200 Sobic003G317100--Sobic003G286600 Sobic006G099900 Sobic006G099900 Sobic003G317100--Sobic006G099900 Sobic003G317100--Sobic006G084600 Sobic003G317100--Sobic004G221500 Sobic003G352300 Sobic003G352300 Sobic003G317100--Sobic003G352300 Sobic005G045900 Sobic005G045900 Sobic003G317100--Sobic005G045900 Sobic001G435000 Sobic001G435000 Sobic003G317100--Sobic001G435000 Sobic010G044400 Sobic010G044400 Sobic003G317100--Sobic010G044400 Sobic004G229800 Sobic004G229800 Sobic003G317100--Sobic004G229800 Sobic004G107700 Sobic004G107700 Sobic003G437200--Sobic004G107700 Sobic003G417800 Sobic003G417800 Sobic003G437200--Sobic003G417800 Sobic003G437200--Sobic006G084600 Sobic003G062600 Sobic003G062600 Sobic003G437200--Sobic003G062600 Sobic001G403000 Sobic001G403000 Sobic003G437200--Sobic001G403000 Sobic003G437200--Sobic007G155100 Sobic001G119400 Sobic001G119400 Sobic003G437200--Sobic001G119400 Sobic004G176600 Sobic004G176600 Sobic003G437200--Sobic004G176600 Sobic002G375400 Sobic002G375400 Sobic003G437200--Sobic002G375400 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G067600 Sobic007G067600 Sobic007G066932--Sobic007G067600 Sobic004G304300 Sobic004G304300 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic007G066932--Sobic006G084600 Sobic007G135201 Sobic007G135201 Sobic007G066932--Sobic007G135201 Sobic001G348700--Sobic003G252800 Sobic001G348700--Sobic004G221500 Sobic001G348700--Sobic010G084700 Sobic001G348700--Sobic006G084600 Sobic001G348700--Sobic010G117900 Sobic005G206601 Sobic005G206601 Sobic001G348700--Sobic005G206601 Sobic004G216600 Sobic004G216600 Sobic001G348700--Sobic004G216600 Sobic001G348700--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic001G348700--Sobic001G317200 Sobic010G084300--Sobic007G067350 Sobic003G430600 Sobic003G430600 Sobic010G084300--Sobic003G430600 Sobic010G084300--Sobic006G084600 Sobic003G200700 Sobic003G200700 Sobic010G084300--Sobic003G200700 Sobic010G084300--Sobic007G066932 Sobic007G227300 Sobic007G227300 Sobic010G084300--Sobic007G227300 Sobic007G067400 Sobic007G067400 Sobic010G084300--Sobic007G067400 Sobic009G240600 Sobic009G240600 Sobic010G084300--Sobic009G240600 Sobic010G084300--Sobic007G067600 Sobic001G231600--Sobic007G135201 Sobic001G231600--Sobic007G067600 Sobic001G495164 Sobic001G495164 Sobic001G231600--Sobic001G495164 Sobic001G231600--Sobic006G084600 Sobic001G231600--Sobic007G067350 Sobic001G231600--Sobic010G102300 Sobic001G231600--Sobic002G195400 Sobic004G128400 Sobic004G128400 Sobic001G231600--Sobic004G128400 Sobic001G231600--Sobic004G221500
Octagon: transcription factors


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