Gene annotation
Transcriptome id Sobic.004G088551.1
Synonym -
Functional annotation -
UniProt A0A1Z5RM06
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G317000 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
3 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
4 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
5 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.001G423800 DNA binding protein, putative, expressed -
8 Sobic.007G061300 - -
9 Sobic.004G112300 - -
10 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.008G136400 expressed protein -
12 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.002G104900 B12D protein, putative, expressed -
14 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
15 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
16 Sobic.004G189400 expressed protein -
17 Sobic.002G261000 expressed protein -
18 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
20 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase


Gene co-expression network
sample Sobic004G088551 Sobic004G088551 Sobic001G317000 Sobic001G317000 Sobic004G088551--Sobic001G317000 Sobic002G195400 Sobic002G195400 Sobic004G088551--Sobic002G195400 Sobic005G101800 Sobic005G101800 Sobic004G088551--Sobic005G101800 Sobic007G067600 Sobic007G067600 Sobic004G088551--Sobic007G067600 Sobic010G117900 Sobic010G117900 Sobic004G088551--Sobic010G117900 Sobic001G317200 Sobic001G317200 Sobic004G088551--Sobic001G317200 Sobic001G423800 Sobic001G423800 Sobic004G088551--Sobic001G423800 Sobic007G061300 Sobic007G061300 Sobic004G088551--Sobic007G061300 Sobic004G112300 Sobic004G112300 Sobic004G088551--Sobic004G112300 Sobic001G317000--Sobic004G088551 Sobic001G317000--Sobic001G423800 Sobic006G275200 Sobic006G275200 Sobic001G317000--Sobic006G275200 Sobic001G119400 Sobic001G119400 Sobic001G317000--Sobic001G119400 Sobic001G317000--Sobic002G195400 Sobic001G097600 Sobic001G097600 Sobic001G317000--Sobic001G097600 Sobic002G261000 Sobic002G261000 Sobic001G317000--Sobic002G261000 Sobic009G183400 Sobic009G183400 Sobic001G317000--Sobic009G183400 Sobic001G038900 Sobic001G038900 Sobic001G317000--Sobic001G038900 Sobic002G195400--Sobic007G067600 Sobic001G319700 Sobic001G319700 Sobic002G195400--Sobic001G319700 Sobic003G426100 Sobic003G426100 Sobic002G195400--Sobic003G426100 Sobic007G066932 Sobic007G066932 Sobic002G195400--Sobic007G066932 Sobic010G102300 Sobic010G102300 Sobic002G195400--Sobic010G102300 Sobic003G426000 Sobic003G426000 Sobic002G195400--Sobic003G426000 Sobic007G067350 Sobic007G067350 Sobic002G195400--Sobic007G067350 Sobic002G195400--Sobic001G317000 Sobic004G304300 Sobic004G304300 Sobic002G195400--Sobic004G304300 Sobic010G084400 Sobic010G084400 Sobic005G101800--Sobic010G084400 Sobic005G101800--Sobic010G117900 Sobic003G252800 Sobic003G252800 Sobic005G101800--Sobic003G252800 Sobic007G227300 Sobic007G227300 Sobic005G101800--Sobic007G227300 Sobic005G101800--Sobic001G317200 Sobic003G426300 Sobic003G426300 Sobic005G101800--Sobic003G426300 Sobic006G099900 Sobic006G099900 Sobic005G101800--Sobic006G099900 Sobic009G128700 Sobic009G128700 Sobic005G101800--Sobic009G128700 Sobic001G400800 Sobic001G400800 Sobic005G101800--Sobic001G400800 Sobic007G067600--Sobic002G195400 Sobic007G067600--Sobic007G066932 Sobic007G067600--Sobic001G319700 Sobic007G067600--Sobic010G102300 Sobic007G067600--Sobic005G101800 Sobic007G067600--Sobic010G117900 Sobic003G430600 Sobic003G430600 Sobic007G067600--Sobic003G430600 Sobic007G067600--Sobic003G426000 Sobic001G495164 Sobic001G495164 Sobic007G067600--Sobic001G495164 Sobic010G117900--Sobic005G101800 Sobic010G117900--Sobic003G252800 Sobic010G084700 Sobic010G084700 Sobic010G117900--Sobic010G084700 Sobic010G117900--Sobic007G227300 Sobic004G221500 Sobic004G221500 Sobic010G117900--Sobic004G221500 Sobic010G117900--Sobic010G084400 Sobic010G117900--Sobic007G067600 Sobic010G117900--Sobic002G195400 Sobic001G348700 Sobic001G348700 Sobic010G117900--Sobic001G348700 Sobic005G051200 Sobic005G051200 Sobic001G317200--Sobic005G051200 Sobic001G317200--Sobic006G099900 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic001G317200--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic001G317200--Sobic005G101800 Sobic002G416600 Sobic002G416600 Sobic001G317200--Sobic002G416600 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic002G140400 Sobic002G140400 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic008G136400 Sobic008G136400 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic004G189400 Sobic004G189400 Sobic001G423800--Sobic004G189400 Sobic007G061300--Sobic004G189400 Sobic002G263400 Sobic002G263400 Sobic007G061300--Sobic002G263400 Sobic001G187200 Sobic001G187200 Sobic007G061300--Sobic001G187200 Sobic004G148000 Sobic004G148000 Sobic007G061300--Sobic004G148000 Sobic004G148200 Sobic004G148200 Sobic007G061300--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic007G061300--Sobic005G029200 Sobic007G061300--Sobic004G088551 Sobic007G061300--Sobic010G084400 Sobic007G061300--Sobic007G227300 Sobic004G112300--Sobic004G088551 Sobic002G326100 Sobic002G326100 Sobic004G112300--Sobic002G326100 Sobic001G231400 Sobic001G231400 Sobic004G112300--Sobic001G231400 Sobic002G192000 Sobic002G192000 Sobic004G112300--Sobic002G192000 Sobic004G112300--Sobic004G243100 Sobic002G139400 Sobic002G139400 Sobic004G112300--Sobic002G139400 Sobic003G200700 Sobic003G200700 Sobic004G112300--Sobic003G200700 Sobic004G112300--Sobic001G317000 Sobic004G112300--Sobic001G018300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.