Gene annotation
Transcriptome id Sobic.007G145600.1
Synonym 4CL.1, 4CL1, Sb07g022040, AT4CL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
4-Coumarate-CoA ligase (PubMedID : 22313236)
AMP-binding domain containing protein, expressed
UniProt C5YLR0
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF244
NCBI CDD -
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G21240 : 4-coumarate:CoA ligase 2
RAP-DB (Rice) LOC_Os08g34790.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005813 , Zm00025a019174 , Zm00025a030940
Brachypodium KQJ98507 , KQJ93616
Barley HORVU4Hr1G012680.10 , HORVU0Hr1G018190.5 , HORVU0Hr1G018190.4 , HORVU0Hr1G018190.7 , HORVU0Hr1G018190.6 , HORVU0Hr1G018190.1 , HORVU0Hr1G018190.3 , HORVU0Hr1G018190.2 , HORVU0Hr1G018190.9 , HORVU0Hr1G018190.8 , HORVU3Hr1G100420.1 , HORVU7Hr1G111130.4 , HORVU7Hr1G111130.6 , HORVU7Hr1G111130.7 , HORVU7Hr1G111130.2 , HORVU7Hr1G111130.3 , HORVU6Hr1G030390.3 , HORVU6Hr1G030390.2 , HORVU6Hr1G030390.5 , HORVU0Hr1G018190.11 , HORVU0Hr1G018190.10 , HORVU0Hr1G018190.12 , HORVU3Hr1G100420.10 , HORVU3Hr1G100420.11 , HORVU4Hr1G012680.9 , HORVU4Hr1G012680.8 , HORVU4Hr1G012680.3 , HORVU4Hr1G012680.2 , HORVU4Hr1G012680.1 , HORVU4Hr1G012680.7 , HORVU4Hr1G012680.5 , HORVU4Hr1G012680.4 , HORVU3Hr1G100420.8 , HORVU3Hr1G100420.9 , HORVU3Hr1G100420.4 , HORVU3Hr1G100420.5 , HORVU3Hr1G100420.6 , HORVU7Hr1G111130.5 , HORVU3Hr1G100420.3 , HORVU2Hr1G066630.3 , HORVU2Hr1G066630.2 , HORVU2Hr1G066630.1 , HORVU0Hr1G002720.1 , HORVU0Hr1G002720.3 , HORVU0Hr1G002720.2 , HORVU0Hr1G002720.5 , HORVU0Hr1G002720.4 , HORVU0Hr1G002720.7 , HORVU0Hr1G002720.6 , HORVU4Hr1G012660.4 , HORVU4Hr1G012660.1 , HORVU4Hr1G012660.3 , HORVU4Hr1G012660.2
Wheat TraesCS6A02G151700 , TraesCS4D02G074600 , TraesCS6D02G141700 , TraesCS4D02G074700 , TraesCS2B02G171200 , TraesCS3D02G468000 , TraesCS3D02G468000 , TraesCS4A02G239000 , TraesCS7A02G496200 , TraesCS6B02G179900 , TraesCS6B02G179900 , TraesCS2D02G150400 , TraesCS4B02G076100 , TraesCS4B02G076100 , TraesCS3B02G515400 , TraesCS2A02G145800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
3 Sobic.001G339700 expressed protein -
4 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.002G104900 B12D protein, putative, expressed -
6 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
7 Sobic.010G178500 Expressed in drought and heat(PubMedID : 29862293)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@endothelial differentiation-related factor 1, putative, expressed K03627: putative transcription factor
8 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.003G252800 hypothetical protein -
10 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
11 Sobic.004G189400 expressed protein -
12 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
13 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
15 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.004G088551 - -
17 Sobic.003G240600 VQ domain containing protein, putative, expressed -
18 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
19 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
20 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -


Gene co-expression network
sample Sobic007G145600 Sobic007G145600 Sobic001G317200 Sobic001G317200 Sobic007G145600--Sobic001G317200 Sobic010G239300 Sobic010G239300 Sobic007G145600--Sobic010G239300 Sobic001G339700 Sobic001G339700 Sobic007G145600--Sobic001G339700 Sobic001G119100 Sobic001G119100 Sobic007G145600--Sobic001G119100 Sobic002G104900 Sobic002G104900 Sobic007G145600--Sobic002G104900 Sobic010G084400 Sobic010G084400 Sobic007G145600--Sobic010G084400 Sobic010G178500 Sobic010G178500 Sobic007G145600--Sobic010G178500 Sobic001G252300 Sobic001G252300 Sobic007G145600--Sobic001G252300 Sobic003G252800 Sobic003G252800 Sobic007G145600--Sobic003G252800 Sobic005G051200 Sobic005G051200 Sobic001G317200--Sobic005G051200 Sobic006G099900 Sobic006G099900 Sobic001G317200--Sobic006G099900 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic001G317200--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic005G101800 Sobic005G101800 Sobic001G317200--Sobic005G101800 Sobic002G416600 Sobic002G416600 Sobic001G317200--Sobic002G416600 Sobic002G415100 Sobic002G415100 Sobic010G239300--Sobic002G415100 Sobic010G239300--Sobic001G317200 Sobic009G128700 Sobic009G128700 Sobic010G239300--Sobic009G128700 Sobic010G239300--Sobic010G084400 Sobic010G239300--Sobic002G416600 Sobic003G087300 Sobic003G087300 Sobic010G239300--Sobic003G087300 Sobic010G239300--Sobic007G145600 Sobic010G239300--Sobic006G099900 Sobic010G239300--Sobic005G101800 Sobic001G533400 Sobic001G533400 Sobic001G339700--Sobic001G533400 Sobic001G339700--Sobic001G317200 Sobic001G339700--Sobic007G145600 Sobic001G339700--Sobic010G084400 Sobic001G339700--Sobic003G252800 Sobic001G339700--Sobic006G099900 Sobic008G025600 Sobic008G025600 Sobic001G339700--Sobic008G025600 Sobic001G339700--Sobic005G101800 Sobic005G084600 Sobic005G084600 Sobic001G339700--Sobic005G084600 Sobic001G119000 Sobic001G119000 Sobic001G119100--Sobic001G119000 Sobic002G183200 Sobic002G183200 Sobic001G119100--Sobic002G183200 Sobic003G227300 Sobic003G227300 Sobic001G119100--Sobic003G227300 Sobic001G119100--Sobic007G145600 Sobic005G091500 Sobic005G091500 Sobic001G119100--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic001G119100--Sobic004G189400 Sobic001G119100--Sobic010G084400 Sobic007G061300 Sobic007G061300 Sobic001G119100--Sobic007G061300 Sobic001G119100--Sobic001G339700 Sobic001G317000 Sobic001G317000 Sobic002G104900--Sobic001G317000 Sobic002G104900--Sobic007G145600 Sobic002G104900--Sobic010G178500 Sobic001G015100 Sobic001G015100 Sobic002G104900--Sobic001G015100 Sobic009G141800 Sobic009G141800 Sobic002G104900--Sobic009G141800 Sobic002G140400 Sobic002G140400 Sobic002G104900--Sobic002G140400 Sobic004G088551 Sobic004G088551 Sobic002G104900--Sobic004G088551 Sobic003G094200 Sobic003G094200 Sobic002G104900--Sobic003G094200 Sobic002G263400 Sobic002G263400 Sobic002G104900--Sobic002G263400 Sobic010G084400--Sobic003G252800 Sobic010G084400--Sobic005G101800 Sobic010G084400--Sobic006G099900 Sobic010G084400--Sobic001G317200 Sobic010G084400--Sobic009G128700 Sobic007G227300 Sobic007G227300 Sobic010G084400--Sobic007G227300 Sobic010G117900 Sobic010G117900 Sobic010G084400--Sobic010G117900 Sobic010G084400--Sobic010G239300 Sobic010G084400--Sobic004G189400 Sobic010G178500--Sobic001G317000 Sobic010G178500--Sobic002G140400 Sobic010G178500--Sobic002G104900 Sobic010G178500--Sobic007G145600 Sobic001G124600 Sobic001G124600 Sobic010G178500--Sobic001G124600 Sobic010G178500--Sobic003G094200 Sobic010G178500--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic010G178500--Sobic001G423800 Sobic010G178500--Sobic002G263400 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic001G252300--Sobic002G416600 Sobic001G252300--Sobic008G050600 Sobic001G252300--Sobic003G286600 Sobic003G252800--Sobic006G099900 Sobic003G252800--Sobic010G084400 Sobic001G348700 Sobic001G348700 Sobic003G252800--Sobic001G348700 Sobic003G252800--Sobic001G317200 Sobic003G252800--Sobic005G101800 Sobic003G252800--Sobic007G227300 Sobic003G252800--Sobic010G117900 Sobic003G252800--Sobic009G128700 Sobic004G221500 Sobic004G221500 Sobic003G252800--Sobic004G221500
Octagon: transcription factors


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