Gene annotation
Transcriptome id Sobic.010G239300.1
Synonym Sb10g028000
Functional annotation oryzain beta chain precursor, putative, expressed
UniProt C5Z8D2
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF344
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G43060 : Granulin repeat cysteine protease family protein
RAP-DB (Rice) LOC_Os04g57440.1 : oryzain beta chain precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057208 , Zm00025a009525 , Zm00025a041837 , Zm00025a041836
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
2 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
4 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
5 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.003G087300 nuclease PA3, putative, expressed -
7 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
10 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
11 Sobic.003G252800 hypothetical protein -
12 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G070800 expressed protein -
14 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.002G034800 - -
16 Sobic.009G231000 - -
17 Sobic.001G339700 expressed protein -
18 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
19 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.010G213700 GDU1, putative, expressed -


Gene co-expression network
sample Sobic010G239300 Sobic010G239300 Sobic002G415100 Sobic002G415100 Sobic010G239300--Sobic002G415100 Sobic001G317200 Sobic001G317200 Sobic010G239300--Sobic001G317200 Sobic009G128700 Sobic009G128700 Sobic010G239300--Sobic009G128700 Sobic010G084400 Sobic010G084400 Sobic010G239300--Sobic010G084400 Sobic002G416600 Sobic002G416600 Sobic010G239300--Sobic002G416600 Sobic003G087300 Sobic003G087300 Sobic010G239300--Sobic003G087300 Sobic007G145600 Sobic007G145600 Sobic010G239300--Sobic007G145600 Sobic006G099900 Sobic006G099900 Sobic010G239300--Sobic006G099900 Sobic005G101800 Sobic005G101800 Sobic010G239300--Sobic005G101800 Sobic002G415100--Sobic010G239300 Sobic003G280200 Sobic003G280200 Sobic002G415100--Sobic003G280200 Sobic002G415100--Sobic009G128700 Sobic002G415100--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic002G415100--Sobic003G297600 Sobic010G213700 Sobic010G213700 Sobic002G415100--Sobic010G213700 Sobic002G034800 Sobic002G034800 Sobic002G415100--Sobic002G034800 Sobic009G231000 Sobic009G231000 Sobic002G415100--Sobic009G231000 Sobic003G156200 Sobic003G156200 Sobic002G415100--Sobic003G156200 Sobic005G051200 Sobic005G051200 Sobic001G317200--Sobic005G051200 Sobic001G317200--Sobic006G099900 Sobic003G252800 Sobic003G252800 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic001G317200--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic001G317200--Sobic005G101800 Sobic001G317200--Sobic002G416600 Sobic009G128700--Sobic010G084400 Sobic009G128700--Sobic003G252800 Sobic003G426300 Sobic003G426300 Sobic009G128700--Sobic003G426300 Sobic009G128700--Sobic005G101800 Sobic009G128700--Sobic010G239300 Sobic009G128700--Sobic002G415100 Sobic003G426000 Sobic003G426000 Sobic009G128700--Sobic003G426000 Sobic009G128700--Sobic006G099900 Sobic009G128700--Sobic003G280200 Sobic010G084400--Sobic003G252800 Sobic010G084400--Sobic005G101800 Sobic010G084400--Sobic006G099900 Sobic010G084400--Sobic001G317200 Sobic010G084400--Sobic009G128700 Sobic007G227300 Sobic007G227300 Sobic010G084400--Sobic007G227300 Sobic010G117900 Sobic010G117900 Sobic010G084400--Sobic010G117900 Sobic010G084400--Sobic010G239300 Sobic004G189400 Sobic004G189400 Sobic010G084400--Sobic004G189400 Sobic002G416600--Sobic003G087300 Sobic002G416600--Sobic005G051200 Sobic002G416600--Sobic001G317200 Sobic001G025300 Sobic001G025300 Sobic002G416600--Sobic001G025300 Sobic001G070800 Sobic001G070800 Sobic002G416600--Sobic001G070800 Sobic004G166700 Sobic004G166700 Sobic002G416600--Sobic004G166700 Sobic002G416600--Sobic008G050600 Sobic001G252300 Sobic001G252300 Sobic002G416600--Sobic001G252300 Sobic002G416600--Sobic010G239300 Sobic003G087300--Sobic002G416600 Sobic010G052700 Sobic010G052700 Sobic003G087300--Sobic010G052700 Sobic003G087300--Sobic010G239300 Sobic007G141500 Sobic007G141500 Sobic003G087300--Sobic007G141500 Sobic006G039100 Sobic006G039100 Sobic003G087300--Sobic006G039100 Sobic003G087300--Sobic004G166700 Sobic003G087300--Sobic009G231000 Sobic002G125700 Sobic002G125700 Sobic003G087300--Sobic002G125700 Sobic003G087300--Sobic001G252300 Sobic007G145600--Sobic001G317200 Sobic007G145600--Sobic010G239300 Sobic001G339700 Sobic001G339700 Sobic007G145600--Sobic001G339700 Sobic001G119100 Sobic001G119100 Sobic007G145600--Sobic001G119100 Sobic002G104900 Sobic002G104900 Sobic007G145600--Sobic002G104900 Sobic007G145600--Sobic010G084400 Sobic010G178500 Sobic010G178500 Sobic007G145600--Sobic010G178500 Sobic007G145600--Sobic001G252300 Sobic007G145600--Sobic003G252800 Sobic006G099900--Sobic007G227300 Sobic006G099900--Sobic003G252800 Sobic006G099900--Sobic001G317200 Sobic006G099900--Sobic003G286600 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic006G099900--Sobic008G050600 Sobic005G091500 Sobic005G091500 Sobic006G099900--Sobic005G091500 Sobic006G277600 Sobic006G277600 Sobic006G099900--Sobic006G277600 Sobic005G101800--Sobic010G084400 Sobic005G101800--Sobic010G117900 Sobic005G101800--Sobic003G252800 Sobic005G101800--Sobic007G227300 Sobic005G101800--Sobic001G317200 Sobic005G101800--Sobic003G426300 Sobic005G101800--Sobic006G099900 Sobic005G101800--Sobic009G128700 Sobic001G400800 Sobic001G400800 Sobic005G101800--Sobic001G400800
Octagon: transcription factors


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