Gene annotation
Transcriptome id Sobic.005G051200.2
Synonym ethylene response factor 58, Sb05g004170, SbERF58
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
ethylene-responsive transcription factor ERF110, putative, expressed
UniProt A0A1Z5RGR9
Pfam PF00847
Panther DB PTHR31190
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G61890 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g32620.1 : ethylene-responsive transcription factor ERF114, putative, expressed
MaizeGDB (Corn) Zm00025a022220 , Zm00025a054017 , Zm00025a029907 , Zm00025a026695 , Zm00025a005425 , Zm00025a034188 , Zm00025a056053
Brachypodium KQJ82323 , KQJ82324 , KQK10160 , PNT61078 , KQJ92086 , KQK10781 , KQK01756
Barley HORVU6Hr1G078520.1 , HORVU6Hr1G078520.2 , HORVU5Hr1G080790.4 , HORVU5Hr1G080790.3 , HORVU5Hr1G080790.2 , HORVU5Hr1G080790.1 , HORVU5Hr1G036590.2 , HORVU5Hr1G036590.3
Wheat TraesCS5D02G129400 , TraesCS5A02G112600 , TraesCS3B02G412500 , TraesCS5B02G118200 , TraesCS3D02G372900 , TraesCS5B02G315500 , TraesCS5D02G320800 , TraesCS5B02G315500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
3 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
4 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.009G164600 ZOS1-14 - C2H2 zinc finger protein, expressed -
6 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
7 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
8 Sobic.005G063100 expressed protein -
9 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
10 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
11 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
12 Sobic.009G229000 expressed protein -
13 Sobic.004G245500 expressed protein -
14 Sobic.008G136400 expressed protein -
15 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
16 Sobic.010G176600 - -
17 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
18 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.006G275200 CHCH domain containing protein, expressed -
20 Sobic.006G092500 expressed protein -


Gene co-expression network
sample Sobic005G051200 Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic005G051200--Sobic001G317200 Sobic009G035200 Sobic009G035200 Sobic005G051200--Sobic009G035200 Sobic008G050600 Sobic008G050600 Sobic005G051200--Sobic008G050600 Sobic002G416600 Sobic002G416600 Sobic005G051200--Sobic002G416600 Sobic009G164600 Sobic009G164600 Sobic005G051200--Sobic009G164600 Sobic003G345100 Sobic003G345100 Sobic005G051200--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic005G051200--Sobic003G286600 Sobic005G063100 Sobic005G063100 Sobic005G051200--Sobic005G063100 Sobic001G252300 Sobic001G252300 Sobic005G051200--Sobic001G252300 Sobic001G317200--Sobic005G051200 Sobic006G099900 Sobic006G099900 Sobic001G317200--Sobic006G099900 Sobic003G252800 Sobic003G252800 Sobic001G317200--Sobic003G252800 Sobic010G084400 Sobic010G084400 Sobic001G317200--Sobic010G084400 Sobic001G317200--Sobic003G286600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic005G101800 Sobic005G101800 Sobic001G317200--Sobic005G101800 Sobic001G317200--Sobic002G416600 Sobic009G035200--Sobic005G051200 Sobic009G229000 Sobic009G229000 Sobic009G035200--Sobic009G229000 Sobic009G035200--Sobic008G050600 Sobic002G414600 Sobic002G414600 Sobic009G035200--Sobic002G414600 Sobic008G136400 Sobic008G136400 Sobic009G035200--Sobic008G136400 Sobic009G035200--Sobic003G345100 Sobic009G035200--Sobic005G063100 Sobic006G092500 Sobic006G092500 Sobic009G035200--Sobic006G092500 Sobic009G035200--Sobic001G317200 Sobic008G050600--Sobic003G345100 Sobic001G140900 Sobic001G140900 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic008G050600--Sobic003G286600 Sobic008G050600--Sobic009G164600 Sobic001G038900 Sobic001G038900 Sobic008G050600--Sobic001G038900 Sobic008G050600--Sobic008G136400 Sobic004G189400 Sobic004G189400 Sobic008G050600--Sobic004G189400 Sobic008G050600--Sobic005G051200 Sobic003G087300 Sobic003G087300 Sobic002G416600--Sobic003G087300 Sobic002G416600--Sobic005G051200 Sobic002G416600--Sobic001G317200 Sobic001G025300 Sobic001G025300 Sobic002G416600--Sobic001G025300 Sobic001G070800 Sobic001G070800 Sobic002G416600--Sobic001G070800 Sobic004G166700 Sobic004G166700 Sobic002G416600--Sobic004G166700 Sobic002G416600--Sobic008G050600 Sobic002G416600--Sobic001G252300 Sobic010G239300 Sobic010G239300 Sobic002G416600--Sobic010G239300 Sobic009G164600--Sobic003G345100 Sobic009G164600--Sobic008G050600 Sobic009G164600--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic009G164600--Sobic004G208700 Sobic009G164600--Sobic003G286600 Sobic009G164600--Sobic005G063100 Sobic009G164600--Sobic001G140900 Sobic009G234100 Sobic009G234100 Sobic009G164600--Sobic009G234100 Sobic001G435000 Sobic001G435000 Sobic009G164600--Sobic001G435000 Sobic003G345100--Sobic008G050600 Sobic003G345100--Sobic005G063100 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic003G345100--Sobic004G208700 Sobic005G099000 Sobic005G099000 Sobic003G345100--Sobic005G099000 Sobic009G159400 Sobic009G159400 Sobic003G345100--Sobic009G159400 Sobic003G369100 Sobic003G369100 Sobic003G345100--Sobic003G369100 Sobic003G345100--Sobic001G435000 Sobic010G176600 Sobic010G176600 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic003G286600--Sobic005G063100 Sobic003G286600--Sobic006G099900 Sobic003G286600--Sobic004G208700 Sobic002G140400 Sobic002G140400 Sobic003G286600--Sobic002G140400 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic003G286600--Sobic009G164600 Sobic005G063100--Sobic008G050600 Sobic005G063100--Sobic003G345100 Sobic005G063100--Sobic003G286600 Sobic005G063100--Sobic001G140900 Sobic005G063100--Sobic005G099000 Sobic005G063100--Sobic009G234100 Sobic005G091500 Sobic005G091500 Sobic005G063100--Sobic005G091500 Sobic005G063100--Sobic004G208700 Sobic005G063100--Sobic001G435000 Sobic001G252300--Sobic002G414600 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic001G252300--Sobic002G416600 Sobic001G252300--Sobic008G050600 Sobic001G252300--Sobic003G286600
Octagon: transcription factors


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