Gene annotation
Transcriptome id Sobic.002G414600.1
Synonym Sb02g042700
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
hypoxia-responsive family protein, putative, expressed
UniProt C5X5I5
Pfam PF04588
Panther DB PTHR28018 PTHR28018:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27760 : Hypoxia-responsive family protein
RAP-DB (Rice) LOC_Os07g47670.2 : hypoxia-responsive family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015420
Brachypodium KQK00134
Barley HORVU2Hr1G102130.5 , HORVU2Hr1G102130.4 , HORVU2Hr1G102130.7 , HORVU2Hr1G102130.6 , HORVU2Hr1G102130.1 , HORVU2Hr1G102130.3 , HORVU2Hr1G102130.2 , HORVU2Hr1G102130.9 , HORVU2Hr1G102130.8 , HORVU2Hr1G019250.3 , HORVU2Hr1G019250.2 , HORVU2Hr1G019250.1 , HORVU1Hr1G052270.2 , HORVU3Hr1G048660.6
Wheat TraesCS2D02G111700 , TraesCS2D02G438000 , TraesCS2A02G111000 , TraesCS2B02G460200 , TraesCS2B02G130000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G414600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
2 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
3 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
4 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
5 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
7 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
8 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
9 Sobic.006G275200 CHCH domain containing protein, expressed -
10 Sobic.008G136400 expressed protein -
11 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
13 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
14 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
15 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
16 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
17 Sobic.006G092500 expressed protein -
18 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
19 Sobic.001G070800 expressed protein -
20 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase


Gene co-expression network
sample Sobic002G414600 Sobic002G414600 Sobic001G252300 Sobic001G252300 Sobic002G414600--Sobic001G252300 Sobic009G183400 Sobic009G183400 Sobic002G414600--Sobic009G183400 Sobic001G097600 Sobic001G097600 Sobic002G414600--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic002G414600--Sobic002G393000 Sobic001G119400 Sobic001G119400 Sobic002G414600--Sobic001G119400 Sobic009G008900 Sobic009G008900 Sobic002G414600--Sobic009G008900 Sobic005G051200 Sobic005G051200 Sobic002G414600--Sobic005G051200 Sobic006G173900 Sobic006G173900 Sobic002G414600--Sobic006G173900 Sobic006G275200 Sobic006G275200 Sobic002G414600--Sobic006G275200 Sobic001G252300--Sobic002G414600 Sobic004G166700 Sobic004G166700 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic001G252300--Sobic004G208700 Sobic001G317200 Sobic001G317200 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic002G416600 Sobic002G416600 Sobic001G252300--Sobic002G416600 Sobic008G050600 Sobic008G050600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600 Sobic001G476500 Sobic001G476500 Sobic009G183400--Sobic001G476500 Sobic009G183400--Sobic001G119400 Sobic006G092500 Sobic006G092500 Sobic009G183400--Sobic006G092500 Sobic001G038900 Sobic001G038900 Sobic009G183400--Sobic001G038900 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic009G183400--Sobic002G414600 Sobic004G100700 Sobic004G100700 Sobic009G183400--Sobic004G100700 Sobic001G140900 Sobic001G140900 Sobic009G183400--Sobic001G140900 Sobic001G097600--Sobic009G183400 Sobic001G097600--Sobic006G275200 Sobic001G097600--Sobic002G414600 Sobic001G317000 Sobic001G317000 Sobic001G097600--Sobic001G317000 Sobic003G367200 Sobic003G367200 Sobic001G097600--Sobic003G367200 Sobic001G097600--Sobic001G038900 Sobic001G097600--Sobic001G119400 Sobic004G216600 Sobic004G216600 Sobic001G097600--Sobic004G216600 Sobic008G136400 Sobic008G136400 Sobic001G097600--Sobic008G136400 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic002G393000--Sobic006G173900 Sobic001G423800 Sobic001G423800 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G393000--Sobic002G414600 Sobic002G393000--Sobic009G183400 Sobic001G119400--Sobic009G183400 Sobic001G119400--Sobic001G423800 Sobic001G119400--Sobic002G393000 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic001G119400--Sobic003G417800 Sobic009G008900--Sobic006G173900 Sobic009G008900--Sobic001G119400 Sobic009G008900--Sobic006G275200 Sobic009G008900--Sobic002G393000 Sobic009G008900--Sobic008G136400 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic009G008900--Sobic002G414600 Sobic009G008900--Sobic001G038900 Sobic005G051200--Sobic001G317200 Sobic009G035200 Sobic009G035200 Sobic005G051200--Sobic009G035200 Sobic005G051200--Sobic008G050600 Sobic005G051200--Sobic002G416600 Sobic009G164600 Sobic009G164600 Sobic005G051200--Sobic009G164600 Sobic003G345100 Sobic003G345100 Sobic005G051200--Sobic003G345100 Sobic005G051200--Sobic003G286600 Sobic005G063100 Sobic005G063100 Sobic005G051200--Sobic005G063100 Sobic005G051200--Sobic001G252300 Sobic006G173900--Sobic009G008900 Sobic006G173900--Sobic010G099900 Sobic006G173900--Sobic002G393000 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic006G173900--Sobic002G414600 Sobic006G173900--Sobic001G119400 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic006G275200--Sobic009G008900 Sobic006G275200--Sobic006G173900 Sobic006G275200--Sobic001G097600 Sobic006G275200--Sobic001G119400 Sobic006G275200--Sobic003G367200 Sobic006G275200--Sobic001G317000 Sobic006G275200--Sobic001G038900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.