Gene annotation
Transcriptome id Sobic.006G173900.1
Synonym GPX6, Sb06g024920, PHGPX, ATGPX6, LSC803
Functional annotation glutathione peroxidase, putative, expressed
UniProt Q6JAG4
Pfam PF00578
Panther DB PTHR11592 PTHR11592:SF42
NCBI CDD KOG1651; Glutathione peroxidase
KEGG Orthology K00432; gpx, btuE, glutathione peroxidase
Gene Ontology GO:0016491; oxidoreductase activity GO:0016209antioxidant activity GO:0006979response to oxidative stress GO:0004602glutathione peroxidase activity


Orthologs (automatic annotation)
TAIR AT4G11600 : glutathione peroxidase 6
RAP-DB (Rice) LOC_Os04g46960.2 : glutathione peroxidase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002377 , Zm00025a056843 , Zm00025a010256 , Zm00025a032236
Brachypodium KQJ83986 , KQK00667
Barley HORVU6Hr1G063830.10 , HORVU6Hr1G063830.2 , HORVU6Hr1G063830.3 , HORVU6Hr1G063830.1 , HORVU6Hr1G063830.6 , HORVU6Hr1G063830.5 , HORVU6Hr1G063830.8 , HORVU6Hr1G063830.9
Wheat TraesCS2D02G407700 , TraesCS6D02G228800 , TraesCS6A02G246400 , TraesCS2B02G429100 , TraesCS6B02G278100
Populus -


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cDNA sequences
Sobic.006G173900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
2 Sobic.010G099900 expressed protein -
3 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
4 Sobic.006G275200 CHCH domain containing protein, expressed -
5 Sobic.008G136400 expressed protein -
6 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
7 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.001G423800 DNA binding protein, putative, expressed -
9 Sobic.004G177700 AIG1, putative, expressed -
10 Sobic.010G176600 - -
11 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
14 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
15 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
16 Sobic.001G281400 expressed protein -
17 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
18 Sobic.003G078100 B3 DNA binding domain containing protein, expressed -
19 Sobic.001G319500 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -


Gene co-expression network
sample Sobic006G173900 Sobic006G173900 Sobic009G008900 Sobic009G008900 Sobic006G173900--Sobic009G008900 Sobic010G099900 Sobic010G099900 Sobic006G173900--Sobic010G099900 Sobic002G393000 Sobic002G393000 Sobic006G173900--Sobic002G393000 Sobic006G275200 Sobic006G275200 Sobic006G173900--Sobic006G275200 Sobic008G136400 Sobic008G136400 Sobic006G173900--Sobic008G136400 Sobic002G414600 Sobic002G414600 Sobic006G173900--Sobic002G414600 Sobic001G119400 Sobic001G119400 Sobic006G173900--Sobic001G119400 Sobic001G423800 Sobic001G423800 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700 Sobic009G008900--Sobic006G173900 Sobic009G008900--Sobic001G119400 Sobic009G008900--Sobic006G275200 Sobic009G008900--Sobic002G393000 Sobic009G008900--Sobic008G136400 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic009G008900--Sobic002G414600 Sobic001G038900 Sobic001G038900 Sobic009G008900--Sobic001G038900 Sobic010G099900--Sobic006G173900 Sobic010G099900--Sobic002G393000 Sobic010G099900--Sobic006G275200 Sobic010G099900--Sobic009G008900 Sobic010G099900--Sobic001G119400 Sobic006G127900 Sobic006G127900 Sobic010G099900--Sobic006G127900 Sobic010G099900--Sobic008G136400 Sobic010G099900--Sobic002G414600 Sobic004G216600 Sobic004G216600 Sobic010G099900--Sobic004G216600 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic002G393000--Sobic006G173900 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic002G393000--Sobic010G099900 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic006G275200--Sobic009G008900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic006G275200--Sobic001G119400 Sobic003G367200 Sobic003G367200 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic006G275200--Sobic001G038900 Sobic008G136400--Sobic001G038900 Sobic008G050600 Sobic008G050600 Sobic008G136400--Sobic008G050600 Sobic002G140400 Sobic002G140400 Sobic008G136400--Sobic002G140400 Sobic008G136400--Sobic006G275200 Sobic001G140900 Sobic001G140900 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic004G189400 Sobic004G189400 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic008G136400--Sobic009G008900 Sobic001G252300 Sobic001G252300 Sobic002G414600--Sobic001G252300 Sobic002G414600--Sobic009G183400 Sobic002G414600--Sobic001G097600 Sobic002G414600--Sobic002G393000 Sobic002G414600--Sobic001G119400 Sobic002G414600--Sobic009G008900 Sobic005G051200 Sobic005G051200 Sobic002G414600--Sobic005G051200 Sobic002G414600--Sobic006G173900 Sobic002G414600--Sobic006G275200 Sobic001G119400--Sobic009G183400 Sobic001G119400--Sobic001G423800 Sobic001G119400--Sobic002G393000 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic001G119400--Sobic003G417800 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic001G423800--Sobic008G136400 Sobic001G423800--Sobic002G393000 Sobic001G423800--Sobic004G189400 Sobic004G177700--Sobic006G173900 Sobic004G177700--Sobic002G393000 Sobic004G177700--Sobic006G275200 Sobic004G177700--Sobic010G099900 Sobic004G177700--Sobic009G008900 Sobic010G086200 Sobic010G086200 Sobic004G177700--Sobic010G086200 Sobic010G149300 Sobic010G149300 Sobic004G177700--Sobic010G149300 Sobic006G230500 Sobic006G230500 Sobic004G177700--Sobic006G230500 Sobic004G177700--Sobic002G414600
Octagon: transcription factors


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