Gene annotation
Transcriptome id Sobic.003G078100.1
Synonym Sb03g006590, TEM2, EDF2, RAV2, RAP2.8
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5XQN8
Pfam PF00847 PF02362
Panther DB PTHR31140 PTHR31140:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G68840 : related to ABI3/VP1 2
RAP-DB (Rice) LOC_Os01g04800.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003162 , Zm00025a044450 , Zm00025a052255 , Zm00025a033527 , Zm00025a027935 , Zm00025a038878 , Zm00025a036522 , Zm00025a023512 , Zm00025a053927
Brachypodium KQK05045 , KQJ89377 , KQK02620 , KQK02618 , KQK02619 , KQJ97599 , KQJ95321 , KQK09293 , KQK23932 , KQJ92192
Barley HORVU5Hr1G040620.3 , HORVU5Hr1G040620.2 , HORVU5Hr1G040620.1 , HORVU5Hr1G040620.4 , HORVU3Hr1G010190.1 , HORVU3Hr1G010190.4 , HORVU4Hr1G021650.21 , HORVU4Hr1G021650.20 , HORVU4Hr1G021650.22 , HORVU4Hr1G082030.1 , HORVU4Hr1G082030.3 , HORVU4Hr1G082030.2 , HORVU4Hr1G082030.5 , HORVU3Hr1G064640.1 , HORVU3Hr1G064640.3 , HORVU3Hr1G064640.2 , HORVU3Hr1G064640.5 , HORVU3Hr1G064640.4 , HORVU3Hr1G064640.7 , HORVU3Hr1G064640.6 , HORVU3Hr1G064640.8 , HORVU1Hr1G082670.10 , HORVU3Hr1G010240.2 , HORVU3Hr1G010240.1 , HORVU5Hr1G040620.5 , HORVU4Hr1G074300.2 , HORVU4Hr1G074300.3 , HORVU4Hr1G074300.1 , HORVU4Hr1G074300.6 , HORVU4Hr1G074300.4 , HORVU4Hr1G074300.5 , HORVU3Hr1G064590.1 , HORVU3Hr1G010060.2 , HORVU3Hr1G010060.1 , HORVU4Hr1G082090.2 , HORVU4Hr1G082030.4 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU1Hr1G082670.1 , HORVU4Hr1G021650.7 , HORVU1Hr1G051780.2 , HORVU4Hr1G021650.8 , HORVU3Hr1G010140.5 , HORVU3Hr1G010140.4 , HORVU3Hr1G010140.1 , HORVU3Hr1G010140.3 , HORVU3Hr1G010140.2 , HORVU4Hr1G021650.18 , HORVU4Hr1G021650.19 , HORVU4Hr1G021650.14 , HORVU4Hr1G021650.15 , HORVU4Hr1G021650.16 , HORVU4Hr1G021650.17 , HORVU3Hr1G010260.4 , HORVU3Hr1G010260.5 , HORVU3Hr1G010260.1 , HORVU3Hr1G010260.2 , HORVU3Hr1G010260.3 , HORVU4Hr1G082090.3 , HORVU4Hr1G082090.1 , HORVU4Hr1G082090.4 , HORVU3Hr1G010100.1 , HORVU3Hr1G010100.2
Wheat TraesCS2A02G460700 , TraesCS2D02G460900 , TraesCS4B02G117100 , TraesCSU02G227200 , TraesCSU02G231000 , TraesCS4D02G114900 , TraesCS1A02G200500 , TraesCS5B02G126200 , TraesCS3D02G260100 , TraesCS1B02G215000 , TraesCS5A02G127100 , TraesCS4A02G198300 , TraesCS4A02G198300 , TraesCS5D02G134700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
2 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
3 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
4 Sobic.001G387900 Chaperone - similar to Cluster: DnaJ domain containing protein(PubMedID : 24655390)@ Oryza sativa(PubMedID : 27586543)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 24655390)@chaperone protein dnaJ, putative, expressed -
5 Sobic.001G423800 DNA binding protein, putative, expressed -
6 Sobic.006G275200 CHCH domain containing protein, expressed -
7 Sobic.007G057000 expressed protein -
8 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G361100 similar to Glutathione transferase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G108200 expressed protein -
11 Sobic.006G127900 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.004G304625 - K15095: (+)-neomenthol dehydrogenase
13 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
14 Sobic.008G136400 expressed protein -
15 Sobic.001G308300 expressed protein -
16 Sobic.009G070400 expressed protein -
17 Sobic.009G061200 universal stress protein domain containing protein, putative, expressed -
18 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
19 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
20 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic003G078100 Sobic003G078100 Sobic009G008900 Sobic009G008900 Sobic003G078100--Sobic009G008900 Sobic002G393000 Sobic002G393000 Sobic003G078100--Sobic002G393000 Sobic006G158600 Sobic006G158600 Sobic003G078100--Sobic006G158600 Sobic001G387900 Sobic001G387900 Sobic003G078100--Sobic001G387900 Sobic001G423800 Sobic001G423800 Sobic003G078100--Sobic001G423800 Sobic006G275200 Sobic006G275200 Sobic003G078100--Sobic006G275200 Sobic007G057000 Sobic007G057000 Sobic003G078100--Sobic007G057000 Sobic001G119400 Sobic001G119400 Sobic003G078100--Sobic001G119400 Sobic002G361100 Sobic002G361100 Sobic003G078100--Sobic002G361100 Sobic006G173900 Sobic006G173900 Sobic009G008900--Sobic006G173900 Sobic009G008900--Sobic001G119400 Sobic009G008900--Sobic006G275200 Sobic009G008900--Sobic002G393000 Sobic008G136400 Sobic008G136400 Sobic009G008900--Sobic008G136400 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic002G414600 Sobic002G414600 Sobic009G008900--Sobic002G414600 Sobic001G038900 Sobic001G038900 Sobic009G008900--Sobic001G038900 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic002G393000--Sobic006G173900 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic006G158600--Sobic008G136400 Sobic002G192000 Sobic002G192000 Sobic006G158600--Sobic002G192000 Sobic002G140400 Sobic002G140400 Sobic006G158600--Sobic002G140400 Sobic002G333400 Sobic002G333400 Sobic006G158600--Sobic002G333400 Sobic006G056400 Sobic006G056400 Sobic006G158600--Sobic006G056400 Sobic006G158600--Sobic001G038900 Sobic006G158600--Sobic001G423800 Sobic002G336600 Sobic002G336600 Sobic006G158600--Sobic002G336600 Sobic004G243100 Sobic004G243100 Sobic006G158600--Sobic004G243100 Sobic001G108200 Sobic001G108200 Sobic001G387900--Sobic001G108200 Sobic001G308300 Sobic001G308300 Sobic001G387900--Sobic001G308300 Sobic004G141200 Sobic004G141200 Sobic001G387900--Sobic004G141200 Sobic003G382800 Sobic003G382800 Sobic001G387900--Sobic003G382800 Sobic003G086600 Sobic003G086600 Sobic001G387900--Sobic003G086600 Sobic001G387900--Sobic006G158600 Sobic001G387900--Sobic003G078100 Sobic003G369100 Sobic003G369100 Sobic001G387900--Sobic003G369100 Sobic004G304625 Sobic004G304625 Sobic001G387900--Sobic004G304625 Sobic001G423800--Sobic004G243100 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic001G423800--Sobic008G136400 Sobic001G423800--Sobic002G393000 Sobic004G189400 Sobic004G189400 Sobic001G423800--Sobic004G189400 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic006G275200--Sobic009G008900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic006G275200--Sobic001G119400 Sobic003G367200 Sobic003G367200 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic006G275200--Sobic001G038900 Sobic010G066700 Sobic010G066700 Sobic007G057000--Sobic010G066700 Sobic002G188900 Sobic002G188900 Sobic007G057000--Sobic002G188900 Sobic007G057000--Sobic009G183400 Sobic007G057000--Sobic004G304625 Sobic007G057000--Sobic001G119400 Sobic007G057000--Sobic007G155100 Sobic007G057000--Sobic001G423800 Sobic003G033900 Sobic003G033900 Sobic007G057000--Sobic003G033900 Sobic004G100700 Sobic004G100700 Sobic007G057000--Sobic004G100700 Sobic001G119400--Sobic009G183400 Sobic001G119400--Sobic001G423800 Sobic001G119400--Sobic002G393000 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic001G119400--Sobic003G417800 Sobic009G061200 Sobic009G061200 Sobic002G361100--Sobic009G061200 Sobic001G319600 Sobic001G319600 Sobic002G361100--Sobic001G319600 Sobic002G361100--Sobic001G387900 Sobic002G361100--Sobic003G078100 Sobic009G224100 Sobic009G224100 Sobic002G361100--Sobic009G224100 Sobic004G037000 Sobic004G037000 Sobic002G361100--Sobic004G037000 Sobic010G084600 Sobic010G084600 Sobic002G361100--Sobic010G084600 Sobic002G361100--Sobic001G108200 Sobic004G216600 Sobic004G216600 Sobic002G361100--Sobic004G216600
Octagon: transcription factors


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