Gene annotation
Transcriptome id Sobic.006G127900.1,Sobic.006G127900.2
Synonym Sb06g020810
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6PLQ4 , A0A1B6PLQ5
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF34
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05805 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g41229.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056340
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G099900 expressed protein -
2 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
3 Sobic.009G032800 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.003G078100 B3 DNA binding domain containing protein, expressed -
5 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
6 Sobic.006G275200 CHCH domain containing protein, expressed -
7 Sobic.006G092500 expressed protein -
8 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
9 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
10 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
11 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
12 Sobic.009G061200 universal stress protein domain containing protein, putative, expressed -
13 Sobic.006G249300 expressed protein -
14 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
15 Sobic.002G261000 expressed protein -
16 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.001G387900 Chaperone - similar to Cluster: DnaJ domain containing protein(PubMedID : 24655390)@ Oryza sativa(PubMedID : 27586543)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 24655390)@chaperone protein dnaJ, putative, expressed -
19 Sobic.001G108200 expressed protein -
20 Sobic.003G033900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase


Gene co-expression network
sample Sobic006G127900 Sobic006G127900 Sobic010G099900 Sobic010G099900 Sobic006G127900--Sobic010G099900 Sobic009G008900 Sobic009G008900 Sobic006G127900--Sobic009G008900 Sobic009G032800 Sobic009G032800 Sobic006G127900--Sobic009G032800 Sobic003G078100 Sobic003G078100 Sobic006G127900--Sobic003G078100 Sobic003G086600 Sobic003G086600 Sobic006G127900--Sobic003G086600 Sobic006G275200 Sobic006G275200 Sobic006G127900--Sobic006G275200 Sobic006G092500 Sobic006G092500 Sobic006G127900--Sobic006G092500 Sobic001G476500 Sobic001G476500 Sobic006G127900--Sobic001G476500 Sobic006G173900 Sobic006G173900 Sobic006G127900--Sobic006G173900 Sobic010G099900--Sobic006G173900 Sobic002G393000 Sobic002G393000 Sobic010G099900--Sobic002G393000 Sobic010G099900--Sobic006G275200 Sobic010G099900--Sobic009G008900 Sobic001G119400 Sobic001G119400 Sobic010G099900--Sobic001G119400 Sobic010G099900--Sobic006G127900 Sobic008G136400 Sobic008G136400 Sobic010G099900--Sobic008G136400 Sobic002G414600 Sobic002G414600 Sobic010G099900--Sobic002G414600 Sobic004G216600 Sobic004G216600 Sobic010G099900--Sobic004G216600 Sobic009G008900--Sobic006G173900 Sobic009G008900--Sobic001G119400 Sobic009G008900--Sobic006G275200 Sobic009G008900--Sobic002G393000 Sobic009G008900--Sobic008G136400 Sobic001G423800 Sobic001G423800 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic009G008900--Sobic002G414600 Sobic001G038900 Sobic001G038900 Sobic009G008900--Sobic001G038900 Sobic009G032800--Sobic006G127900 Sobic009G032800--Sobic006G092500 Sobic009G032800--Sobic001G476500 Sobic009G061200 Sobic009G061200 Sobic009G032800--Sobic009G061200 Sobic001G190200 Sobic001G190200 Sobic009G032800--Sobic001G190200 Sobic003G033900 Sobic003G033900 Sobic009G032800--Sobic003G033900 Sobic001G487300 Sobic001G487300 Sobic009G032800--Sobic001G487300 Sobic009G032800--Sobic004G216600 Sobic008G186100 Sobic008G186100 Sobic009G032800--Sobic008G186100 Sobic003G078100--Sobic009G008900 Sobic003G078100--Sobic002G393000 Sobic006G158600 Sobic006G158600 Sobic003G078100--Sobic006G158600 Sobic001G387900 Sobic001G387900 Sobic003G078100--Sobic001G387900 Sobic003G078100--Sobic001G423800 Sobic003G078100--Sobic006G275200 Sobic007G057000 Sobic007G057000 Sobic003G078100--Sobic007G057000 Sobic003G078100--Sobic001G119400 Sobic002G361100 Sobic002G361100 Sobic003G078100--Sobic002G361100 Sobic002G068600 Sobic002G068600 Sobic003G086600--Sobic002G068600 Sobic003G394400 Sobic003G394400 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic007G026600 Sobic007G026600 Sobic003G086600--Sobic007G026600 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic006G275200--Sobic009G008900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic006G275200--Sobic001G119400 Sobic003G367200 Sobic003G367200 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic006G275200--Sobic001G038900 Sobic006G092500--Sobic001G476500 Sobic009G183400 Sobic009G183400 Sobic006G092500--Sobic009G183400 Sobic004G100700 Sobic004G100700 Sobic006G092500--Sobic004G100700 Sobic004G205100 Sobic004G205100 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic005G063100 Sobic005G063100 Sobic006G092500--Sobic005G063100 Sobic003G352300 Sobic003G352300 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic010G259600 Sobic010G259600 Sobic006G092500--Sobic010G259600 Sobic001G476500--Sobic006G092500 Sobic001G476500--Sobic009G183400 Sobic003G417800 Sobic003G417800 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G476500--Sobic001G119400 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000 Sobic006G173900--Sobic009G008900 Sobic006G173900--Sobic010G099900 Sobic006G173900--Sobic002G393000 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic006G173900--Sobic002G414600 Sobic006G173900--Sobic001G119400 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700
Octagon: transcription factors


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