Gene annotation
Transcriptome id Sobic.009G032800.1
Synonym Sb09g002760, RCI3A, RCI3
Functional annotation peroxidase precursor, putative, expressed
UniProt C5YZI6
Pfam PF00141
Panther DB PTHR31235 PTHR31235:SF36
NCBI CDD -
KEGG Orthology K00430; peroxidase
Gene Ontology GO:0006979; response to oxidative stress GO:0004601peroxidase activity


Orthologs (automatic annotation)
TAIR AT1G05260 : Peroxidase superfamily protein
RAP-DB (Rice) LOC_Os05g04450.1 : peroxidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a055308 , Zm00025a034847 , Zm00025a055310 , Zm00025a036133 , Zm00025a036127 , Zm00025a042941 , Zm00025a044843
Brachypodium KQK18159 , KQK21559 , KQK04186 , KQK04190 , KQK07688 , KQK07689 , KQK04037 , KQK18160
Barley HORVU7Hr1G054510.2 , HORVU7Hr1G054510.1 , HORVU6Hr1G076470.2 , HORVU6Hr1G076470.3 , HORVU7Hr1G020300.8 , HORVU7Hr1G020300.9 , HORVU7Hr1G020300.2 , HORVU7Hr1G020300.3 , HORVU7Hr1G020300.4 , HORVU7Hr1G020300.5 , HORVU7Hr1G020300.7 , HORVU1Hr1G016820.2 , HORVU7Hr1G020300.10 , HORVU7Hr1G020300.1
Wheat TraesCS6A02G368200 , TraesCS7D02G262400 , TraesCS7B02G274500 , TraesCS4A02G389000 , TraesCS7A02G262000 , TraesCS7B02G159300 , TraesCS1B02G096300 , TraesCS6A02G368400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127900 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.006G092500 expressed protein -
3 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
4 Sobic.009G061200 universal stress protein domain containing protein, putative, expressed -
5 Sobic.001G190200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
6 Sobic.003G033900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
7 Sobic.001G487300 expressed protein -
8 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
9 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
11 Sobic.010G099900 expressed protein -
12 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.001G466000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
14 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
15 Sobic.003G116800 cinnamoyl CoA reductase, putative, expressed K09753: cinnamoyl-CoA reductase
16 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
17 Sobic.002G361100 similar to Glutathione transferase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.001G319600 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.009G033300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G481400 similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic009G032800 Sobic009G032800 Sobic006G127900 Sobic006G127900 Sobic009G032800--Sobic006G127900 Sobic006G092500 Sobic006G092500 Sobic009G032800--Sobic006G092500 Sobic001G476500 Sobic001G476500 Sobic009G032800--Sobic001G476500 Sobic009G061200 Sobic009G061200 Sobic009G032800--Sobic009G061200 Sobic001G190200 Sobic001G190200 Sobic009G032800--Sobic001G190200 Sobic003G033900 Sobic003G033900 Sobic009G032800--Sobic003G033900 Sobic001G487300 Sobic001G487300 Sobic009G032800--Sobic001G487300 Sobic004G216600 Sobic004G216600 Sobic009G032800--Sobic004G216600 Sobic008G186100 Sobic008G186100 Sobic009G032800--Sobic008G186100 Sobic010G099900 Sobic010G099900 Sobic006G127900--Sobic010G099900 Sobic009G008900 Sobic009G008900 Sobic006G127900--Sobic009G008900 Sobic006G127900--Sobic009G032800 Sobic003G078100 Sobic003G078100 Sobic006G127900--Sobic003G078100 Sobic003G086600 Sobic003G086600 Sobic006G127900--Sobic003G086600 Sobic006G275200 Sobic006G275200 Sobic006G127900--Sobic006G275200 Sobic006G127900--Sobic006G092500 Sobic006G127900--Sobic001G476500 Sobic006G173900 Sobic006G173900 Sobic006G127900--Sobic006G173900 Sobic006G092500--Sobic001G476500 Sobic009G183400 Sobic009G183400 Sobic006G092500--Sobic009G183400 Sobic004G100700 Sobic004G100700 Sobic006G092500--Sobic004G100700 Sobic004G205100 Sobic004G205100 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic005G063100 Sobic005G063100 Sobic006G092500--Sobic005G063100 Sobic003G352300 Sobic003G352300 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic010G259600 Sobic010G259600 Sobic006G092500--Sobic010G259600 Sobic001G476500--Sobic006G092500 Sobic001G476500--Sobic009G183400 Sobic003G417800 Sobic003G417800 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G119400 Sobic001G119400 Sobic001G476500--Sobic001G119400 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000 Sobic009G061200--Sobic004G216600 Sobic009G061200--Sobic009G183400 Sobic009G061200--Sobic001G476500 Sobic009G061200--Sobic001G119400 Sobic001G423800 Sobic001G423800 Sobic009G061200--Sobic001G423800 Sobic002G361100 Sobic002G361100 Sobic009G061200--Sobic002G361100 Sobic002G188900 Sobic002G188900 Sobic009G061200--Sobic002G188900 Sobic009G061200--Sobic009G008900 Sobic009G061200--Sobic004G100700 Sobic001G190200--Sobic010G099900 Sobic001G190200--Sobic006G173900 Sobic002G393000 Sobic002G393000 Sobic001G190200--Sobic002G393000 Sobic005G051200 Sobic005G051200 Sobic001G190200--Sobic005G051200 Sobic010G084700 Sobic010G084700 Sobic001G190200--Sobic010G084700 Sobic010G176600 Sobic010G176600 Sobic001G190200--Sobic010G176600 Sobic001G319600 Sobic001G319600 Sobic001G190200--Sobic001G319600 Sobic001G190200--Sobic006G275200 Sobic001G025300 Sobic001G025300 Sobic001G190200--Sobic001G025300 Sobic003G033900--Sobic002G188900 Sobic001G108200 Sobic001G108200 Sobic003G033900--Sobic001G108200 Sobic003G033900--Sobic004G100700 Sobic003G393900 Sobic003G393900 Sobic003G033900--Sobic003G393900 Sobic003G033900--Sobic001G476500 Sobic004G304625 Sobic004G304625 Sobic003G033900--Sobic004G304625 Sobic005G011300 Sobic005G011300 Sobic003G033900--Sobic005G011300 Sobic004G141200 Sobic004G141200 Sobic003G033900--Sobic004G141200 Sobic004G229800 Sobic004G229800 Sobic003G033900--Sobic004G229800 Sobic001G403000 Sobic001G403000 Sobic001G487300--Sobic001G403000 Sobic004G221500 Sobic004G221500 Sobic001G487300--Sobic004G221500 Sobic006G084600 Sobic006G084600 Sobic001G487300--Sobic006G084600 Sobic001G487300--Sobic009G240600 Sobic001G487300--Sobic010G084700 Sobic001G348700 Sobic001G348700 Sobic001G487300--Sobic001G348700 Sobic005G206601 Sobic005G206601 Sobic001G487300--Sobic005G206601 Sobic004G071650 Sobic004G071650 Sobic001G487300--Sobic004G071650 Sobic001G487300--Sobic001G476500 Sobic004G216600--Sobic009G061200 Sobic004G216600--Sobic001G119400 Sobic004G216600--Sobic001G319600 Sobic001G317200 Sobic001G317200 Sobic004G216600--Sobic001G317200 Sobic004G216600--Sobic009G183400 Sobic004G216600--Sobic002G393000 Sobic004G216600--Sobic004G221500 Sobic004G216600--Sobic001G423800 Sobic004G216600--Sobic001G348700 Sobic008G186100--Sobic005G011300 Sobic008G186100--Sobic002G287100 Sobic008G186100--Sobic004G100700 Sobic001G169500 Sobic001G169500 Sobic008G186100--Sobic001G169500 Sobic010G029700 Sobic010G029700 Sobic008G186100--Sobic010G029700 Sobic006G249300 Sobic006G249300 Sobic008G186100--Sobic006G249300 Sobic001G139100 Sobic001G139100 Sobic008G186100--Sobic001G139100 Sobic002G250000 Sobic002G250000 Sobic008G186100--Sobic002G250000 Sobic008G186100--Sobic006G092500
Octagon: transcription factors


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