Gene annotation
Transcriptome id Sobic.001G481400.2,Sobic.001G481400.1
Synonym Sb01g045060, RAP2.2, SbERF11,ethylene response factor 11
Functional annotation similar to AP2 domain containing protein (PubMedID : 24655390)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
similar to AP2 domain containing protein (PubMedID : 24655390)
Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1B6QQ35
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF4
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G72360 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g08470.3,LOC_Os03g08470.2 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049953 , Zm00025a037299 , Zm00025a052430 , Zm00025a020464 , Zm00025a005425 , Zm00025a033098 , Zm00025a024332 , Zm00025a049133 , Zm00025a000949
Brachypodium KQK23284 , KQK01756
Barley HORVU2Hr1G018830.1 , HORVU2Hr1G018830.2 , HORVU4Hr1G077310.6 , HORVU7Hr1G055290.34 , HORVU7Hr1G055290.33 , HORVU7Hr1G055290.30 , HORVU7Hr1G055290.31 , HORVU4Hr1G077310.1 , HORVU4Hr1G077310.2 , HORVU4Hr1G077310.3 , HORVU4Hr1G077310.4 , HORVU4Hr1G077310.7 , HORVU4Hr1G077310.8 , HORVU4Hr1G077310.5 , HORVU6Hr1G078510.1 , HORVU6Hr1G078510.3 , HORVU6Hr1G078510.2 , HORVU1Hr1G082310.1 , HORVU4Hr1G000700.1 , HORVU4Hr1G000700.2
Wheat TraesCS2B02G127800 , TraesCS4B02G299500 , TraesCS4A02G005600 , TraesCS4B02G299400 , TraesCS7B02G162100 , TraesCS3B02G412500 , TraesCS5A02G314600 , TraesCS2A02G109800 , TraesCS7D02G265000 , TraesCS7A02G264100 , TraesCS4D02G298400 , TraesCS6A02G319600 , TraesCS2D02G110000 , TraesCS2D02G110000
Populus -


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cDNA sequences
Sobic.001G481400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
2 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
4 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
5 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
6 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
7 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
8 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
9 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.006G092500 expressed protein -
11 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.010G185000 VQ domain containing protein, putative, expressed -
13 Sobic.002G017800 expressed protein -
14 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
15 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
16 Sobic.001G402200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed -
17 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
18 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
20 Sobic.004G264000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G481400 Sobic001G481400 Sobic009G240600 Sobic009G240600 Sobic001G481400--Sobic009G240600 Sobic001G500000 Sobic001G500000 Sobic001G481400--Sobic001G500000 Sobic001G231700 Sobic001G231700 Sobic001G481400--Sobic001G231700 Sobic001G476500 Sobic001G476500 Sobic001G481400--Sobic001G476500 Sobic004G046200 Sobic004G046200 Sobic001G481400--Sobic004G046200 Sobic003G417800 Sobic003G417800 Sobic001G481400--Sobic003G417800 Sobic006G044100 Sobic006G044100 Sobic001G481400--Sobic006G044100 Sobic002G287100 Sobic002G287100 Sobic001G481400--Sobic002G287100 Sobic006G277600 Sobic006G277600 Sobic001G481400--Sobic006G277600 Sobic009G240600--Sobic001G481400 Sobic007G227300 Sobic007G227300 Sobic009G240600--Sobic007G227300 Sobic009G240600--Sobic001G231700 Sobic006G103000 Sobic006G103000 Sobic009G240600--Sobic006G103000 Sobic009G240600--Sobic001G500000 Sobic009G240600--Sobic002G287100 Sobic009G240600--Sobic001G476500 Sobic009G240600--Sobic003G417800 Sobic001G192200 Sobic001G192200 Sobic009G240600--Sobic001G192200 Sobic003G084400 Sobic003G084400 Sobic001G500000--Sobic003G084400 Sobic001G500000--Sobic002G287100 Sobic001G500000--Sobic001G481400 Sobic001G500000--Sobic009G240600 Sobic001G500000--Sobic004G046200 Sobic001G367600 Sobic001G367600 Sobic001G500000--Sobic001G367600 Sobic009G111000 Sobic009G111000 Sobic001G500000--Sobic009G111000 Sobic001G500000--Sobic001G231700 Sobic001G500000--Sobic006G103000 Sobic001G231700--Sobic006G277600 Sobic001G402200 Sobic001G402200 Sobic001G231700--Sobic001G402200 Sobic001G231700--Sobic001G367600 Sobic001G231700--Sobic006G103000 Sobic001G231700--Sobic009G240600 Sobic006G234800 Sobic006G234800 Sobic001G231700--Sobic006G234800 Sobic001G231700--Sobic001G481400 Sobic001G231700--Sobic001G500000 Sobic002G188900 Sobic002G188900 Sobic001G231700--Sobic002G188900 Sobic006G092500 Sobic006G092500 Sobic001G476500--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic001G476500--Sobic009G183400 Sobic001G476500--Sobic003G417800 Sobic001G476500--Sobic002G287100 Sobic004G100700 Sobic004G100700 Sobic001G476500--Sobic004G100700 Sobic001G476500--Sobic009G240600 Sobic001G119400 Sobic001G119400 Sobic001G476500--Sobic001G119400 Sobic003G033900 Sobic003G033900 Sobic001G476500--Sobic003G033900 Sobic001G476500--Sobic001G500000 Sobic008G106700 Sobic008G106700 Sobic004G046200--Sobic008G106700 Sobic004G046200--Sobic006G044100 Sobic009G187200 Sobic009G187200 Sobic004G046200--Sobic009G187200 Sobic006G199800 Sobic006G199800 Sobic004G046200--Sobic006G199800 Sobic004G046200--Sobic003G084400 Sobic003G255200 Sobic003G255200 Sobic004G046200--Sobic003G255200 Sobic004G046200--Sobic001G500000 Sobic003G079400 Sobic003G079400 Sobic004G046200--Sobic003G079400 Sobic004G046200--Sobic009G111000 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic003G417800--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G417800--Sobic004G107700 Sobic006G099900 Sobic006G099900 Sobic003G417800--Sobic006G099900 Sobic003G352300 Sobic003G352300 Sobic003G417800--Sobic003G352300 Sobic003G417800--Sobic009G240600 Sobic006G044100--Sobic004G046200 Sobic004G176600 Sobic004G176600 Sobic006G044100--Sobic004G176600 Sobic006G044100--Sobic009G187200 Sobic006G044100--Sobic001G481400 Sobic006G044100--Sobic008G106700 Sobic003G366600 Sobic003G366600 Sobic006G044100--Sobic003G366600 Sobic008G172600 Sobic008G172600 Sobic006G044100--Sobic008G172600 Sobic006G044100--Sobic006G277600 Sobic006G044100--Sobic003G255200 Sobic002G287100--Sobic001G500000 Sobic008G186100 Sobic008G186100 Sobic002G287100--Sobic008G186100 Sobic002G287100--Sobic001G476500 Sobic002G287100--Sobic009G240600 Sobic009G033300 Sobic009G033300 Sobic002G287100--Sobic009G033300 Sobic002G287100--Sobic001G481400 Sobic002G287100--Sobic009G183400 Sobic010G029700 Sobic010G029700 Sobic002G287100--Sobic010G029700 Sobic002G287100--Sobic006G092500 Sobic002G354100 Sobic002G354100 Sobic006G277600--Sobic002G354100 Sobic006G277600--Sobic001G231700 Sobic003G117600 Sobic003G117600 Sobic006G277600--Sobic003G117600 Sobic006G277600--Sobic007G227300 Sobic006G277600--Sobic006G099900 Sobic001G503100 Sobic001G503100 Sobic006G277600--Sobic001G503100 Sobic007G184600 Sobic007G184600 Sobic006G277600--Sobic007G184600 Sobic006G277600--Sobic009G111000 Sobic005G206601 Sobic005G206601 Sobic006G277600--Sobic005G206601
Octagon: transcription factors


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