Gene annotation
Transcriptome id Sobic.001G247600.1
Synonym GME, Sb01g021890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5X1K7
Pfam PF01073
Panther DB PTHR10366 PTHR10366:SF327
NCBI CDD KOG1429; dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase
KEGG Orthology K10046; GDP-D-mannose 3', 5'-epimerase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT5G28840 : GDP-D-mannose 3\',5\'-epimerase
RAP-DB (Rice) LOC_Os10g28200.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006917
Brachypodium KQJ88020 , KQJ96734 , KQJ88019 , KQJ88018 , KQJ96733 , KQJ96732 , KQJ96731 , KQJ96736 , KQJ96735
Barley HORVU1Hr1G088560.4 , HORVU1Hr1G088560.5 , HORVU1Hr1G088560.1 , HORVU1Hr1G088560.2 , HORVU1Hr1G088560.3 , HORVU5Hr1G079230.10 , HORVU5Hr1G079230.11 , HORVU5Hr1G079230.1 , HORVU5Hr1G079230.2 , HORVU5Hr1G079230.5 , HORVU5Hr1G079230.7 , HORVU5Hr1G079230.8 , HORVU5Hr1G079230.9 , HORVU2Hr1G030330.1 , HORVU2Hr1G030330.2 , HORVU2Hr1G028300.5 , HORVU2Hr1G028300.4 , HORVU2Hr1G028300.1 , HORVU2Hr1G028300.3 , HORVU2Hr1G028300.2
Wheat TraesCS5D02G309000 , TraesCS1A02G402500 , TraesCS5A02G302400 , TraesCS1B02G431500 , TraesCS5B02G302500 , TraesCS1D02G410200
Populus PNT06613 , PNT35047 , PNS22927 , PNT35048 , PNT35049 , PNT35050


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cDNA sequences
Sobic.001G247600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
2 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
3 Sobic.004G225900 GEM, putative, expressed -
4 Sobic.009G077800 expressed protein -
5 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
6 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.009G139400 expressed protein -
8 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
9 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
10 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
11 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
12 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
13 Sobic.002G017800 expressed protein -
14 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
15 Sobic.001G481400 similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
16 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
17 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
18 Sobic.004G203700 ubiquitin family protein, putative, expressed -
19 Sobic.001G070800 expressed protein -
20 Sobic.010G185000 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G247600 Sobic001G247600 Sobic007G184600 Sobic007G184600 Sobic001G247600--Sobic007G184600 Sobic002G200600 Sobic002G200600 Sobic001G247600--Sobic002G200600 Sobic004G225900 Sobic004G225900 Sobic001G247600--Sobic004G225900 Sobic009G077800 Sobic009G077800 Sobic001G247600--Sobic009G077800 Sobic003G417800 Sobic003G417800 Sobic001G247600--Sobic003G417800 Sobic001G119400 Sobic001G119400 Sobic001G247600--Sobic001G119400 Sobic009G139400 Sobic009G139400 Sobic001G247600--Sobic009G139400 Sobic004G205100 Sobic004G205100 Sobic001G247600--Sobic004G205100 Sobic001G177800 Sobic001G177800 Sobic001G247600--Sobic001G177800 Sobic007G184600--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic007G184600--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic007G184600--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic007G184600--Sobic002G081600 Sobic001G493001 Sobic001G493001 Sobic007G184600--Sobic001G493001 Sobic007G184600--Sobic001G177800 Sobic006G067800 Sobic006G067800 Sobic007G184600--Sobic006G067800 Sobic003G322400 Sobic003G322400 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600 Sobic002G200600--Sobic007G184600 Sobic002G200600--Sobic001G402050 Sobic002G200600--Sobic006G067800 Sobic006G116700 Sobic006G116700 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic007G197800 Sobic007G197800 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic001G018900 Sobic001G018900 Sobic002G200600--Sobic001G018900 Sobic001G130301 Sobic001G130301 Sobic002G200600--Sobic001G130301 Sobic004G225900--Sobic001G247600 Sobic002G017800 Sobic002G017800 Sobic004G225900--Sobic002G017800 Sobic001G318500 Sobic001G318500 Sobic004G225900--Sobic001G318500 Sobic004G225900--Sobic009G077800 Sobic002G302500 Sobic002G302500 Sobic004G225900--Sobic002G302500 Sobic010G270500 Sobic010G270500 Sobic004G225900--Sobic010G270500 Sobic009G111000 Sobic009G111000 Sobic004G225900--Sobic009G111000 Sobic002G004900 Sobic002G004900 Sobic004G225900--Sobic002G004900 Sobic001G325400 Sobic001G325400 Sobic004G225900--Sobic001G325400 Sobic003G297600 Sobic003G297600 Sobic009G077800--Sobic003G297600 Sobic009G077800--Sobic009G139400 Sobic003G393700 Sobic003G393700 Sobic009G077800--Sobic003G393700 Sobic001G070800 Sobic001G070800 Sobic009G077800--Sobic001G070800 Sobic002G055700 Sobic002G055700 Sobic009G077800--Sobic002G055700 Sobic009G077800--Sobic002G017800 Sobic005G029200 Sobic005G029200 Sobic009G077800--Sobic005G029200 Sobic009G077800--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic009G077800--Sobic007G087200 Sobic001G476500 Sobic001G476500 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic009G183400 Sobic009G183400 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic003G417800--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G417800--Sobic004G107700 Sobic006G099900 Sobic006G099900 Sobic003G417800--Sobic006G099900 Sobic003G352300 Sobic003G352300 Sobic003G417800--Sobic003G352300 Sobic009G240600 Sobic009G240600 Sobic003G417800--Sobic009G240600 Sobic001G119400--Sobic009G183400 Sobic001G423800 Sobic001G423800 Sobic001G119400--Sobic001G423800 Sobic002G393000 Sobic002G393000 Sobic001G119400--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic001G119400--Sobic009G008900 Sobic001G119400--Sobic009G139400 Sobic001G038900 Sobic001G038900 Sobic001G119400--Sobic001G038900 Sobic006G275200 Sobic006G275200 Sobic001G119400--Sobic006G275200 Sobic001G119400--Sobic006G099900 Sobic001G119400--Sobic003G417800 Sobic009G139400--Sobic009G077800 Sobic009G139400--Sobic003G297600 Sobic009G139400--Sobic001G119400 Sobic009G139400--Sobic001G177800 Sobic009G139400--Sobic007G184600 Sobic010G066700 Sobic010G066700 Sobic009G139400--Sobic010G066700 Sobic002G353900 Sobic002G353900 Sobic009G139400--Sobic002G353900 Sobic003G382600 Sobic003G382600 Sobic009G139400--Sobic003G382600 Sobic009G139400--Sobic005G029200 Sobic004G205100--Sobic003G352300 Sobic006G092500 Sobic006G092500 Sobic004G205100--Sobic006G092500 Sobic004G205100--Sobic009G183400 Sobic009G159400 Sobic009G159400 Sobic004G205100--Sobic009G159400 Sobic004G205100--Sobic001G476500 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic004G205100--Sobic006G099900 Sobic004G205100--Sobic003G417800 Sobic001G177800--Sobic007G184600 Sobic001G177800--Sobic009G139400 Sobic001G177800--Sobic001G374700 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300
Octagon: transcription factors


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