Gene annotation
Transcriptome id Sobic.004G203700.1
Synonym Sb04g025000
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5XX41
Pfam PF00240
Panther DB PTHR10666 PTHR10666:SF127
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14360 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os02g38410.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021294 , Zm00025a031856
Brachypodium KQK00181 , KQJ83212 , PNT72424
Barley HORVU2Hr1G083680.3 , HORVU2Hr1G083680.2 , HORVU2Hr1G083680.1 , HORVU2Hr1G083700.4 , HORVU2Hr1G083700.2 , HORVU2Hr1G083700.3 , HORVU2Hr1G083700.1 , HORVU2Hr1G083660.1
Wheat TraesCS2A02G321800 , TraesCS6A02G211300 , TraesCS6B02G240800 , TraesCS2A02G321900 , TraesCS2A02G321700 , TraesCS6D02G194400 , TraesCS2B02G360700 , TraesCS2A02G322100 , TraesCS2D02G340900 , TraesCS2A02G322000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
2 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
3 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
4 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
7 Sobic.003G382600 ARGOS, putative, expressed -
8 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
9 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
11 Sobic.010G156500 expressed protein -
12 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
13 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
14 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
15 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
16 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
17 Sobic.002G017800 expressed protein -
18 Sobic.006G154500 GEM, putative, expressed -
19 Sobic.003G007600 expressed protein -
20 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -


Gene co-expression network
sample Sobic004G203700 Sobic004G203700 Sobic003G303100 Sobic003G303100 Sobic004G203700--Sobic003G303100 Sobic002G055700 Sobic002G055700 Sobic004G203700--Sobic002G055700 Sobic002G338500 Sobic002G338500 Sobic004G203700--Sobic002G338500 Sobic001G318500 Sobic001G318500 Sobic004G203700--Sobic001G318500 Sobic003G426400 Sobic003G426400 Sobic004G203700--Sobic003G426400 Sobic003G043600 Sobic003G043600 Sobic004G203700--Sobic003G043600 Sobic003G382600 Sobic003G382600 Sobic004G203700--Sobic003G382600 Sobic002G200600 Sobic002G200600 Sobic004G203700--Sobic002G200600 Sobic001G367600 Sobic001G367600 Sobic004G203700--Sobic001G367600 Sobic003G303100--Sobic002G055700 Sobic001G318700 Sobic001G318700 Sobic003G303100--Sobic001G318700 Sobic004G189400 Sobic004G189400 Sobic003G303100--Sobic004G189400 Sobic003G303100--Sobic003G382600 Sobic004G237800 Sobic004G237800 Sobic003G303100--Sobic004G237800 Sobic003G303100--Sobic003G426400 Sobic004G148200 Sobic004G148200 Sobic003G303100--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic003G303100--Sobic005G029200 Sobic005G063100 Sobic005G063100 Sobic003G303100--Sobic005G063100 Sobic002G055700--Sobic003G303100 Sobic002G055700--Sobic003G382600 Sobic002G055700--Sobic004G237800 Sobic002G055700--Sobic003G426400 Sobic002G353900 Sobic002G353900 Sobic002G055700--Sobic002G353900 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G055700--Sobic002G338500 Sobic002G055700--Sobic001G367600 Sobic002G338500--Sobic003G043600 Sobic002G338500--Sobic003G382600 Sobic002G338500--Sobic002G055700 Sobic010G156500 Sobic010G156500 Sobic002G338500--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic002G338500--Sobic003G364300 Sobic009G145500 Sobic009G145500 Sobic002G338500--Sobic009G145500 Sobic009G145700 Sobic009G145700 Sobic002G338500--Sobic009G145700 Sobic002G338500--Sobic002G353900 Sobic005G196800 Sobic005G196800 Sobic002G338500--Sobic005G196800 Sobic002G004900 Sobic002G004900 Sobic001G318500--Sobic002G004900 Sobic002G017800 Sobic002G017800 Sobic001G318500--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic001G318500--Sobic009G111000 Sobic002G302500 Sobic002G302500 Sobic001G318500--Sobic002G302500 Sobic001G318500--Sobic002G055700 Sobic001G318500--Sobic004G203700 Sobic001G318500--Sobic004G148200 Sobic001G318500--Sobic001G367600 Sobic008G027600 Sobic008G027600 Sobic001G318500--Sobic008G027600 Sobic003G426400--Sobic002G055700 Sobic003G426400--Sobic003G303100 Sobic003G426400--Sobic009G111000 Sobic003G426400--Sobic001G367600 Sobic003G426400--Sobic003G043600 Sobic003G426400--Sobic004G237800 Sobic003G426400--Sobic005G063100 Sobic006G141700 Sobic006G141700 Sobic003G426400--Sobic006G141700 Sobic003G426400--Sobic004G203700 Sobic003G043600--Sobic002G338500 Sobic003G043600--Sobic009G145500 Sobic003G268600 Sobic003G268600 Sobic003G043600--Sobic003G268600 Sobic006G075400 Sobic006G075400 Sobic003G043600--Sobic006G075400 Sobic003G442100 Sobic003G442100 Sobic003G043600--Sobic003G442100 Sobic001G310600 Sobic001G310600 Sobic003G043600--Sobic001G310600 Sobic009G184000 Sobic009G184000 Sobic003G043600--Sobic009G184000 Sobic003G043600--Sobic009G145700 Sobic003G043600--Sobic001G318700 Sobic003G382600--Sobic002G055700 Sobic003G382600--Sobic004G189400 Sobic003G382600--Sobic002G338500 Sobic003G382600--Sobic002G353900 Sobic003G382600--Sobic003G303100 Sobic003G382600--Sobic004G237800 Sobic005G091500 Sobic005G091500 Sobic003G382600--Sobic005G091500 Sobic008G050600 Sobic008G050600 Sobic003G382600--Sobic008G050600 Sobic003G382600--Sobic003G043600 Sobic007G184600 Sobic007G184600 Sobic002G200600--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic002G200600--Sobic001G402050 Sobic006G067800 Sobic006G067800 Sobic002G200600--Sobic006G067800 Sobic006G116700 Sobic006G116700 Sobic002G200600--Sobic006G116700 Sobic002G081600 Sobic002G081600 Sobic002G200600--Sobic002G081600 Sobic007G197800 Sobic007G197800 Sobic002G200600--Sobic007G197800 Sobic001G374700 Sobic001G374700 Sobic002G200600--Sobic001G374700 Sobic001G018900 Sobic001G018900 Sobic002G200600--Sobic001G018900 Sobic001G130301 Sobic001G130301 Sobic002G200600--Sobic001G130301 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G140900 Sobic001G140900 Sobic001G367600--Sobic001G140900 Sobic001G038900 Sobic001G038900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic001G367600--Sobic002G017800 Sobic004G100700 Sobic004G100700 Sobic001G367600--Sobic004G100700 Sobic006G103000 Sobic006G103000 Sobic001G367600--Sobic006G103000 Sobic001G367600--Sobic002G055700 Sobic001G367600--Sobic002G353900
Octagon: transcription factors


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