Gene annotation
Transcriptome id Sobic.001G295200.1
Synonym NDPK1, Sb01g028830
Functional annotation nucleoside diphosphate kinase, putative, expressed
UniProt C5WRH5
Pfam PF00334
Panther DB PTHR11349
NCBI CDD KOG0888; Nucleoside diphosphate kinase
KEGG Orthology K00940; ndk, nucleoside-diphosphate kinase
Gene Ontology GO:0006241; CTP biosynthetic process GO:0006228UTP biosynthetic process GO:0006183GTP biosynthetic process GO:0006165nucleoside diphosphate phosphorylation GO:0004550nucleoside diphosphate kinase activity


Orthologs (automatic annotation)
TAIR AT4G09320 : Nucleoside diphosphate kinase family protein
RAP-DB (Rice) LOC_Os10g41410.2 : nucleoside diphosphate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a003386
Brachypodium -
Barley -
Wheat TraesCS1D02G219000 , TraesCS1B02G230300 , TraesCS1A02G217200
Populus -


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cDNA sequences
Sobic.001G295200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
2 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
3 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
4 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
5 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
6 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
7 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
8 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
9 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
10 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
11 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
12 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
13 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
14 Sobic.003G125650 - K02183: calmodulin
15 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
16 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
17 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
18 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
19 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
20 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e


Gene co-expression network
sample Sobic001G295200 Sobic001G295200 Sobic006G141700 Sobic006G141700 Sobic001G295200--Sobic006G141700 Sobic001G018900 Sobic001G018900 Sobic001G295200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic001G295200--Sobic006G116700 Sobic001G361600 Sobic001G361600 Sobic001G295200--Sobic001G361600 Sobic005G113300 Sobic005G113300 Sobic001G295200--Sobic005G113300 Sobic003G078200 Sobic003G078200 Sobic001G295200--Sobic003G078200 Sobic001G036900 Sobic001G036900 Sobic001G295200--Sobic001G036900 Sobic007G197800 Sobic007G197800 Sobic001G295200--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic001G295200--Sobic009G215200 Sobic006G141700--Sobic001G295200 Sobic009G188000 Sobic009G188000 Sobic006G141700--Sobic009G188000 Sobic004G141100 Sobic004G141100 Sobic006G141700--Sobic004G141100 Sobic002G375100 Sobic002G375100 Sobic006G141700--Sobic002G375100 Sobic006G141700--Sobic006G116700 Sobic006G141700--Sobic001G018900 Sobic003G426400 Sobic003G426400 Sobic006G141700--Sobic003G426400 Sobic001G313600 Sobic001G313600 Sobic006G141700--Sobic001G313600 Sobic003G007600 Sobic003G007600 Sobic006G141700--Sobic003G007600 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic009G050300 Sobic009G050300 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic001G018900--Sobic002G375100 Sobic001G130301 Sobic001G130301 Sobic001G018900--Sobic001G130301 Sobic001G016400 Sobic001G016400 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic001G361600--Sobic001G295200 Sobic001G361600--Sobic005G113300 Sobic001G361600--Sobic006G116700 Sobic001G361600--Sobic001G018900 Sobic004G220000 Sobic004G220000 Sobic001G361600--Sobic004G220000 Sobic001G361600--Sobic003G078200 Sobic001G361600--Sobic006G141700 Sobic001G361600--Sobic009G188000 Sobic001G361600--Sobic003G408100 Sobic005G113300--Sobic004G220000 Sobic005G113300--Sobic001G295200 Sobic005G113300--Sobic001G361600 Sobic005G113300--Sobic006G116700 Sobic005G113300--Sobic001G018900 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic003G160700 Sobic003G160700 Sobic005G113300--Sobic003G160700 Sobic002G372400 Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic009G054800 Sobic009G054800 Sobic003G078200--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic003G078200--Sobic001G018900 Sobic003G078200--Sobic006G116700 Sobic001G036900--Sobic001G018900 Sobic001G036900--Sobic006G116700 Sobic001G036900--Sobic009G215200 Sobic001G036900--Sobic009G050300 Sobic001G403500 Sobic001G403500 Sobic001G036900--Sobic001G403500 Sobic001G036900--Sobic001G016400 Sobic001G036900--Sobic007G197800 Sobic001G036900--Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic001G036900--Sobic001G054900 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700
Octagon: transcription factors


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