Gene annotation
Transcriptome id Sobic.005G113300.1
Synonym Sb05g014880, SHM4
Functional annotation - (PubMedID : 26976818)
serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
UniProt C5Y297
Pfam PF00464
Panther DB PTHR11680 PTHR11680:SF11
NCBI CDD -
KEGG Orthology K00600; glyA, glycine hydroxymethyltransferase
Gene Ontology GO:0016740; transferase activity


Orthologs (automatic annotation)
TAIR AT4G13930 : serine hydroxymethyltransferase 4
RAP-DB (Rice) LOC_Os12g22030.1 : serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a004399 , Zm00025a029842 , Zm00025a050237 , Zm00025a028504 , Zm00025a029775 , Zm00025a028554 , Zm00025a026622
Brachypodium KQJ88548
Barley HORVU2Hr1G110110.1 , HORVU2Hr1G110110.2 , HORVU2Hr1G110110.3 , HORVU1Hr1G055860.3 , HORVU1Hr1G055860.2 , HORVU1Hr1G055860.1
Wheat TraesCS1A02G218700 , TraesCS2B02G521700 , TraesCS2D02G493600 , TraesCS1B02G232200 , TraesCS1B02G232200 , TraesCS1A02G218700 , TraesCS2A02G493700
Populus -


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cDNA sequences
Sobic.005G113300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
2 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
3 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
4 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
5 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
6 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
7 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
8 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
9 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
11 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
12 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
13 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
14 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
15 Sobic.003G125650 - K02183: calmodulin
16 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
17 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
18 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
19 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
20 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3


Gene co-expression network
sample Sobic005G113300 Sobic005G113300 Sobic004G220000 Sobic004G220000 Sobic005G113300--Sobic004G220000 Sobic001G295200 Sobic001G295200 Sobic005G113300--Sobic001G295200 Sobic001G361600 Sobic001G361600 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic003G160700 Sobic003G160700 Sobic005G113300--Sobic003G160700 Sobic004G220000--Sobic005G113300 Sobic004G211833 Sobic004G211833 Sobic004G220000--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic004G220000--Sobic010G012500 Sobic002G398901 Sobic002G398901 Sobic004G220000--Sobic002G398901 Sobic004G220000--Sobic001G295200 Sobic006G083500 Sobic006G083500 Sobic004G220000--Sobic006G083500 Sobic009G188000 Sobic009G188000 Sobic004G220000--Sobic009G188000 Sobic004G220000--Sobic001G361600 Sobic001G130301 Sobic001G130301 Sobic004G220000--Sobic001G130301 Sobic006G141700 Sobic006G141700 Sobic001G295200--Sobic006G141700 Sobic001G295200--Sobic001G018900 Sobic001G295200--Sobic006G116700 Sobic001G295200--Sobic001G361600 Sobic001G295200--Sobic005G113300 Sobic003G078200 Sobic003G078200 Sobic001G295200--Sobic003G078200 Sobic001G036900 Sobic001G036900 Sobic001G295200--Sobic001G036900 Sobic001G295200--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic001G295200--Sobic009G215200 Sobic001G361600--Sobic001G295200 Sobic001G361600--Sobic005G113300 Sobic001G361600--Sobic006G116700 Sobic001G361600--Sobic001G018900 Sobic001G361600--Sobic004G220000 Sobic001G361600--Sobic003G078200 Sobic001G361600--Sobic006G141700 Sobic001G361600--Sobic009G188000 Sobic003G408100 Sobic003G408100 Sobic001G361600--Sobic003G408100 Sobic009G050300 Sobic009G050300 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G016400 Sobic001G016400 Sobic001G018900--Sobic001G016400 Sobic001G018900--Sobic003G408100 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic001G403500 Sobic001G403500 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic006G213000 Sobic006G213000 Sobic009G076400--Sobic006G213000 Sobic007G019400 Sobic007G019400 Sobic009G076400--Sobic007G019400 Sobic003G387900 Sobic003G387900 Sobic009G076400--Sobic003G387900 Sobic007G053300 Sobic007G053300 Sobic009G076400--Sobic007G053300 Sobic006G137100 Sobic006G137100 Sobic009G076400--Sobic006G137100 Sobic001G226500 Sobic001G226500 Sobic009G076400--Sobic001G226500 Sobic002G255300 Sobic002G255300 Sobic009G076400--Sobic002G255300 Sobic003G249700 Sobic003G249700 Sobic009G076400--Sobic003G249700 Sobic009G076400--Sobic004G008400 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G056200 Sobic002G056200 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G125650 Sobic003G125650 Sobic003G160700--Sobic003G125650 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic003G160700--Sobic004G220000 Sobic003G160700--Sobic009G188000 Sobic003G436700 Sobic003G436700 Sobic003G160700--Sobic003G436700
Octagon: transcription factors


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