Gene annotation
Transcriptome id Sobic.009G111000.2,Sobic.009G111000.3
Synonym ATPMEPCRB, Sb09g017920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pectinesterase, putative, expressed
UniProt C5YWT6
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF12
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT4G02330 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os05g29790.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a030727 , Zm00025a024329 , Zm00025a036965
Brachypodium KQK06705 , KQK04129 , KQJ98516
Barley HORVU3Hr1G091360.6 , HORVU3Hr1G091360.7 , HORVU3Hr1G091360.4 , HORVU3Hr1G091360.2 , HORVU3Hr1G091360.3 , HORVU3Hr1G091360.1 , HORVU2Hr1G018710.4 , HORVU2Hr1G018710.1 , HORVU2Hr1G018710.3 , HORVU1Hr1G063710.1 , HORVU1Hr1G063710.2 , HORVU1Hr1G063710.3 , HORVU1Hr1G063710.4 , HORVU1Hr1G059010.2 , HORVU1Hr1G059010.3 , HORVU1Hr1G059010.1
Wheat TraesCS1D02G230800 , TraesCS2A02G109600 , TraesCS2D02G109800 , TraesCS2B02G127600 , TraesCS1D02G264000 , TraesCS1B02G243000 , TraesCS1A02G263900 , TraesCS1A02G231500 , TraesCS1B02G274500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G017800 expressed protein -
2 Sobic.002G176100 membrane protein, putative, expressed -
3 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G417200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@esterase, putative, expressed -
5 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
6 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G319500 receptor protein kinase, putative, expressed -
10 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
11 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
12 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G063100 expressed protein -
15 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
17 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
18 Sobic.010G184800 heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
19 Sobic.003G007600 expressed protein -
20 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic009G111000 Sobic009G111000 Sobic002G017800 Sobic002G017800 Sobic009G111000--Sobic002G017800 Sobic002G176100 Sobic002G176100 Sobic009G111000--Sobic002G176100 Sobic001G367600 Sobic001G367600 Sobic009G111000--Sobic001G367600 Sobic003G417200 Sobic003G417200 Sobic009G111000--Sobic003G417200 Sobic001G325400 Sobic001G325400 Sobic009G111000--Sobic001G325400 Sobic003G426400 Sobic003G426400 Sobic009G111000--Sobic003G426400 Sobic002G055700 Sobic002G055700 Sobic009G111000--Sobic002G055700 Sobic001G500000 Sobic001G500000 Sobic009G111000--Sobic001G500000 Sobic003G319500 Sobic003G319500 Sobic009G111000--Sobic003G319500 Sobic002G017800--Sobic001G367600 Sobic002G017800--Sobic009G111000 Sobic001G318500 Sobic001G318500 Sobic002G017800--Sobic001G318500 Sobic005G018700 Sobic005G018700 Sobic002G017800--Sobic005G018700 Sobic009G077800 Sobic009G077800 Sobic002G017800--Sobic009G077800 Sobic002G017800--Sobic002G055700 Sobic002G017800--Sobic001G325400 Sobic006G103000 Sobic006G103000 Sobic002G017800--Sobic006G103000 Sobic002G017800--Sobic001G500000 Sobic002G176100--Sobic003G319500 Sobic002G176100--Sobic009G111000 Sobic004G141100 Sobic004G141100 Sobic002G176100--Sobic004G141100 Sobic010G008400 Sobic010G008400 Sobic002G176100--Sobic010G008400 Sobic002G176100--Sobic003G417200 Sobic010G184800 Sobic010G184800 Sobic002G176100--Sobic010G184800 Sobic008G009400 Sobic008G009400 Sobic002G176100--Sobic008G009400 Sobic001G304100 Sobic001G304100 Sobic002G176100--Sobic001G304100 Sobic009G188000 Sobic009G188000 Sobic002G176100--Sobic009G188000 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G140900 Sobic001G140900 Sobic001G367600--Sobic001G140900 Sobic001G038900 Sobic001G038900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic001G367600--Sobic002G017800 Sobic004G100700 Sobic004G100700 Sobic001G367600--Sobic004G100700 Sobic001G367600--Sobic006G103000 Sobic001G367600--Sobic002G055700 Sobic002G353900 Sobic002G353900 Sobic001G367600--Sobic002G353900 Sobic003G417200--Sobic009G111000 Sobic003G417200--Sobic003G319500 Sobic003G417200--Sobic001G304100 Sobic005G011300 Sobic005G011300 Sobic003G417200--Sobic005G011300 Sobic003G417200--Sobic001G500000 Sobic003G432700 Sobic003G432700 Sobic003G417200--Sobic003G432700 Sobic003G084400 Sobic003G084400 Sobic003G417200--Sobic003G084400 Sobic003G417200--Sobic002G176100 Sobic008G186100 Sobic008G186100 Sobic003G417200--Sobic008G186100 Sobic006G039100 Sobic006G039100 Sobic001G325400--Sobic006G039100 Sobic001G325400--Sobic009G111000 Sobic002G125700 Sobic002G125700 Sobic001G325400--Sobic002G125700 Sobic001G462700 Sobic001G462700 Sobic001G325400--Sobic001G462700 Sobic001G325400--Sobic009G077800 Sobic001G325400--Sobic002G017800 Sobic009G231000 Sobic009G231000 Sobic001G325400--Sobic009G231000 Sobic007G087200 Sobic007G087200 Sobic001G325400--Sobic007G087200 Sobic003G117600 Sobic003G117600 Sobic001G325400--Sobic003G117600 Sobic003G426400--Sobic002G055700 Sobic003G303100 Sobic003G303100 Sobic003G426400--Sobic003G303100 Sobic003G426400--Sobic009G111000 Sobic003G426400--Sobic001G367600 Sobic003G043600 Sobic003G043600 Sobic003G426400--Sobic003G043600 Sobic004G237800 Sobic004G237800 Sobic003G426400--Sobic004G237800 Sobic005G063100 Sobic005G063100 Sobic003G426400--Sobic005G063100 Sobic006G141700 Sobic006G141700 Sobic003G426400--Sobic006G141700 Sobic004G203700 Sobic004G203700 Sobic003G426400--Sobic004G203700 Sobic002G055700--Sobic003G303100 Sobic003G382600 Sobic003G382600 Sobic002G055700--Sobic003G382600 Sobic002G055700--Sobic004G237800 Sobic002G055700--Sobic003G426400 Sobic002G055700--Sobic002G353900 Sobic004G148200 Sobic004G148200 Sobic002G055700--Sobic004G148200 Sobic004G189400 Sobic004G189400 Sobic002G055700--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic002G055700--Sobic002G338500 Sobic002G055700--Sobic001G367600 Sobic001G500000--Sobic003G084400 Sobic002G287100 Sobic002G287100 Sobic001G500000--Sobic002G287100 Sobic001G481400 Sobic001G481400 Sobic001G500000--Sobic001G481400 Sobic009G240600 Sobic009G240600 Sobic001G500000--Sobic009G240600 Sobic004G046200 Sobic004G046200 Sobic001G500000--Sobic004G046200 Sobic001G500000--Sobic001G367600 Sobic001G500000--Sobic009G111000 Sobic001G500000--Sobic001G231700 Sobic001G500000--Sobic006G103000 Sobic003G319500--Sobic002G176100 Sobic003G319500--Sobic003G417200 Sobic003G319500--Sobic009G111000 Sobic002G213600 Sobic002G213600 Sobic003G319500--Sobic002G213600 Sobic003G319500--Sobic001G304100 Sobic001G139100 Sobic001G139100 Sobic003G319500--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic003G319500--Sobic001G169500 Sobic005G107900 Sobic005G107900 Sobic003G319500--Sobic005G107900 Sobic003G319500--Sobic003G084400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.