Gene annotation
Transcriptome id Sobic.001G231700.1
Synonym Sb01g020310
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5WZI7
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF561
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K00059; fabG, 3-oxoacyl-[acyl-carrier protein] reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13180 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os10g31780.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006738
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.001G402200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed -
3 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
6 Sobic.006G234800 expressed protein -
7 Sobic.001G481400 similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
8 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
10 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
11 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.007G169900 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
13 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.002G017800 expressed protein -
15 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
17 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
18 Sobic.006G268800 transporter family protein, putative, expressed -
19 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
20 Sobic.002G354100 transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic001G231700 Sobic001G231700 Sobic006G277600 Sobic006G277600 Sobic001G231700--Sobic006G277600 Sobic001G402200 Sobic001G402200 Sobic001G231700--Sobic001G402200 Sobic001G367600 Sobic001G367600 Sobic001G231700--Sobic001G367600 Sobic006G103000 Sobic006G103000 Sobic001G231700--Sobic006G103000 Sobic009G240600 Sobic009G240600 Sobic001G231700--Sobic009G240600 Sobic006G234800 Sobic006G234800 Sobic001G231700--Sobic006G234800 Sobic001G481400 Sobic001G481400 Sobic001G231700--Sobic001G481400 Sobic001G500000 Sobic001G500000 Sobic001G231700--Sobic001G500000 Sobic002G188900 Sobic002G188900 Sobic001G231700--Sobic002G188900 Sobic002G354100 Sobic002G354100 Sobic006G277600--Sobic002G354100 Sobic006G277600--Sobic001G231700 Sobic003G117600 Sobic003G117600 Sobic006G277600--Sobic003G117600 Sobic007G227300 Sobic007G227300 Sobic006G277600--Sobic007G227300 Sobic006G099900 Sobic006G099900 Sobic006G277600--Sobic006G099900 Sobic001G503100 Sobic001G503100 Sobic006G277600--Sobic001G503100 Sobic007G184600 Sobic007G184600 Sobic006G277600--Sobic007G184600 Sobic009G111000 Sobic009G111000 Sobic006G277600--Sobic009G111000 Sobic005G206601 Sobic005G206601 Sobic006G277600--Sobic005G206601 Sobic001G402200--Sobic001G231700 Sobic001G402200--Sobic006G103000 Sobic007G155100 Sobic007G155100 Sobic001G402200--Sobic007G155100 Sobic010G211900 Sobic010G211900 Sobic001G402200--Sobic010G211900 Sobic001G402200--Sobic001G367600 Sobic010G042500 Sobic010G042500 Sobic001G402200--Sobic010G042500 Sobic006G268800 Sobic006G268800 Sobic001G402200--Sobic006G268800 Sobic001G402200--Sobic007G227300 Sobic001G018300 Sobic001G018300 Sobic001G402200--Sobic001G018300 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G140900 Sobic001G140900 Sobic001G367600--Sobic001G140900 Sobic001G038900 Sobic001G038900 Sobic001G367600--Sobic001G038900 Sobic001G367600--Sobic001G231700 Sobic002G017800 Sobic002G017800 Sobic001G367600--Sobic002G017800 Sobic004G100700 Sobic004G100700 Sobic001G367600--Sobic004G100700 Sobic001G367600--Sobic006G103000 Sobic002G055700 Sobic002G055700 Sobic001G367600--Sobic002G055700 Sobic002G353900 Sobic002G353900 Sobic001G367600--Sobic002G353900 Sobic006G103000--Sobic001G402200 Sobic006G103000--Sobic006G268800 Sobic006G103000--Sobic001G231700 Sobic006G103000--Sobic001G367600 Sobic006G103000--Sobic009G240600 Sobic006G103000--Sobic010G211900 Sobic003G007600 Sobic003G007600 Sobic006G103000--Sobic003G007600 Sobic006G103000--Sobic007G227300 Sobic006G103000--Sobic001G500000 Sobic009G240600--Sobic001G481400 Sobic009G240600--Sobic007G227300 Sobic009G240600--Sobic001G231700 Sobic009G240600--Sobic006G103000 Sobic009G240600--Sobic001G500000 Sobic002G287100 Sobic002G287100 Sobic009G240600--Sobic002G287100 Sobic001G476500 Sobic001G476500 Sobic009G240600--Sobic001G476500 Sobic003G417800 Sobic003G417800 Sobic009G240600--Sobic003G417800 Sobic001G192200 Sobic001G192200 Sobic009G240600--Sobic001G192200 Sobic001G435000 Sobic001G435000 Sobic006G234800--Sobic001G435000 Sobic006G234800--Sobic001G231700 Sobic004G229800 Sobic004G229800 Sobic006G234800--Sobic004G229800 Sobic001G304100 Sobic001G304100 Sobic006G234800--Sobic001G304100 Sobic006G132900 Sobic006G132900 Sobic006G234800--Sobic006G132900 Sobic006G234800--Sobic001G402200 Sobic006G234800--Sobic001G367600 Sobic007G017500 Sobic007G017500 Sobic006G234800--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic006G234800--Sobic006G075400 Sobic001G481400--Sobic009G240600 Sobic001G481400--Sobic001G500000 Sobic001G481400--Sobic001G231700 Sobic001G481400--Sobic001G476500 Sobic004G046200 Sobic004G046200 Sobic001G481400--Sobic004G046200 Sobic001G481400--Sobic003G417800 Sobic006G044100 Sobic006G044100 Sobic001G481400--Sobic006G044100 Sobic001G481400--Sobic002G287100 Sobic001G481400--Sobic006G277600 Sobic003G084400 Sobic003G084400 Sobic001G500000--Sobic003G084400 Sobic001G500000--Sobic002G287100 Sobic001G500000--Sobic001G481400 Sobic001G500000--Sobic009G240600 Sobic001G500000--Sobic004G046200 Sobic001G500000--Sobic001G367600 Sobic001G500000--Sobic009G111000 Sobic001G500000--Sobic001G231700 Sobic001G500000--Sobic006G103000 Sobic002G188900--Sobic004G100700 Sobic005G011300 Sobic005G011300 Sobic002G188900--Sobic005G011300 Sobic003G033900 Sobic003G033900 Sobic002G188900--Sobic003G033900 Sobic002G188900--Sobic001G140900 Sobic004G141200 Sobic004G141200 Sobic002G188900--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic002G188900--Sobic003G393900 Sobic001G108200 Sobic001G108200 Sobic002G188900--Sobic001G108200 Sobic004G304625 Sobic004G304625 Sobic002G188900--Sobic004G304625 Sobic007G057000 Sobic007G057000 Sobic002G188900--Sobic007G057000
Octagon: transcription factors


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