Gene annotation
| Transcriptome id | Sobic.002G354100.3,Sobic.002G354100.2 |
|---|---|
| Synonym | Sb02g037590, PMT5, ATPLT5, ATPMT5 |
| Functional annotation | transporter family protein, putative, expressed |
| UniProt | C5XCG4 |
| Pfam | PF07690 |
| Panther DB | PTHR23500 PTHR23500:SF152 |
| NCBI CDD | KOG0254; Predicted transporter (major facilitator superfamily) |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT3G18830 : polyol/monosaccharide transporter 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g39350.1 : transporter family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048523 , Zm00025a048520 , Zm00025a048527 , Zm00025a003056 , Zm00025a015021 , Zm00025a015023 , Zm00025a048519 |
| Brachypodium | KQK15520 , KQK15521 , KQK15522 |
| Barley | HORVU2Hr1G036530.1 , HORVU2Hr1G036530.2 , HORVU2Hr1G036570.1 , HORVU2Hr1G036570.3 , HORVU2Hr1G036570.2 , HORVU2Hr1G036570.5 , HORVU2Hr1G036570.4 , HORVU2Hr1G036570.6 |
| Wheat | TraesCS1A02G426300 , TraesCS2A02G189000 , TraesCS2A02G188700 , TraesCS3B02G096700 , TraesCS2D02G198700 , TraesCS1B02G460600 , TraesCS1B02G460600 , TraesCS1D02G435800 , TraesCS2D02G198900 , TraesCS2B02G218600 , TraesCS2B02G218300 , TraesCS2B02G218300 , TraesCS1B02G460700 , TraesCS1B02G460700 , TraesCS2A02G188900 , TraesCS2A02G188900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G277600 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 2 | Sobic.003G117600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed | - |
| 3 | Sobic.001G231700 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 4 | Sobic.003G382600 | ARGOS, putative, expressed | - |
| 5 | Sobic.002G055700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 6 | Sobic.004G189400 | expressed protein | - |
| 7 | Sobic.006G099900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed | - |
| 8 | Sobic.002G353900 | "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed | - |
| 9 | Sobic.005G091500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed | K06901: putative MFS transporter, AGZA family, xanthine/uracil permease |
| 10 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 11 | Sobic.005G063100 | expressed protein | - |
| 12 | Sobic.001G435000 | gibberellin receptor GID1L2, putative, expressed | - |
| 13 | Sobic.001G018300 | cytochrome P450 71E1, putative, expressed | - |
| 14 | Sobic.003G286600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed | K04713: sphinganine C4-monooxygenase |
| 15 | Sobic.003G303100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed | K10418: dynein light chain LC8-type |
| 16 | Sobic.001G038900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed | - |
| 17 | Sobic.009G234100 | WRKY49, expressed | - |
| 18 | Sobic.007G227300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 19 | Sobic.001G114800 | - | - |
| 20 | Sobic.007G184600 | 60S ribosomal protein L38, putative, expressed | K02923: RP-L38e, large subunit ribosomal protein L38e |
Gene co-expression network
Octagon: transcription factors
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