Gene annotation
Transcriptome id Sobic.001G503100.1
Synonym lateral organ boundaries, SbLBD11, ASL16, SbLBD11;lateral organ boundaries, Sb01g047000, LBD29
Functional annotation "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF260 domain containing protein, putative, expressed
UniProt C5WXX1
Pfam PF03195
Panther DB PTHR31529
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42430 : lateral organ boundaries-domain 16
RAP-DB (Rice) LOC_Os03g05500.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053423 , Zm00025a000662 , Zm00025a000663 , Zm00025a032775 , Zm00025a001561
Brachypodium KQK22581 , KQK01414 , KQK23638
Barley HORVU4Hr1G080150.1 , HORVU4Hr1G080150.2 , HORVU4Hr1G080160.1 , HORVU4Hr1G080160.3 , HORVU4Hr1G080160.2 , HORVU4Hr1G063160.6 , HORVU4Hr1G063160.4 , HORVU4Hr1G063160.5 , HORVU4Hr1G063160.3 , HORVU4Hr1G063160.1
Wheat TraesCS4D02G225200 , TraesCS4A02G067300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
2 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
4 Sobic.006G125100 ubiquitin family protein, putative, expressed -
5 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
6 Sobic.004G107700 expressed protein -
7 Sobic.003G255200 expressed protein -
8 Sobic.002G004900 transporter family protein, putative, expressed -
9 Sobic.003G255500 expressed protein -
10 Sobic.010G063000 - -
11 Sobic.002G034800 - -
12 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
13 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
14 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
15 Sobic.002G354100 transporter family protein, putative, expressed -
16 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
18 Sobic.008G172600 ATCHX, putative, expressed -
19 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
20 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -


Gene co-expression network
sample Sobic001G503100 Sobic001G503100 Sobic002G125700 Sobic002G125700 Sobic001G503100--Sobic002G125700 Sobic006G277600 Sobic006G277600 Sobic001G503100--Sobic006G277600 Sobic003G352300 Sobic003G352300 Sobic001G503100--Sobic003G352300 Sobic006G125100 Sobic006G125100 Sobic001G503100--Sobic006G125100 Sobic010G052700 Sobic010G052700 Sobic001G503100--Sobic010G052700 Sobic004G107700 Sobic004G107700 Sobic001G503100--Sobic004G107700 Sobic003G255200 Sobic003G255200 Sobic001G503100--Sobic003G255200 Sobic002G004900 Sobic002G004900 Sobic001G503100--Sobic002G004900 Sobic003G255500 Sobic003G255500 Sobic001G503100--Sobic003G255500 Sobic002G125700--Sobic003G255200 Sobic002G125700--Sobic001G503100 Sobic002G125700--Sobic003G352300 Sobic010G259600 Sobic010G259600 Sobic002G125700--Sobic010G259600 Sobic001G325400 Sobic001G325400 Sobic002G125700--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic002G125700--Sobic007G087200 Sobic002G125700--Sobic004G107700 Sobic009G231000 Sobic009G231000 Sobic002G125700--Sobic009G231000 Sobic010G063000 Sobic010G063000 Sobic002G125700--Sobic010G063000 Sobic002G354100 Sobic002G354100 Sobic006G277600--Sobic002G354100 Sobic001G231700 Sobic001G231700 Sobic006G277600--Sobic001G231700 Sobic003G117600 Sobic003G117600 Sobic006G277600--Sobic003G117600 Sobic007G227300 Sobic007G227300 Sobic006G277600--Sobic007G227300 Sobic006G099900 Sobic006G099900 Sobic006G277600--Sobic006G099900 Sobic006G277600--Sobic001G503100 Sobic007G184600 Sobic007G184600 Sobic006G277600--Sobic007G184600 Sobic009G111000 Sobic009G111000 Sobic006G277600--Sobic009G111000 Sobic005G206601 Sobic005G206601 Sobic006G277600--Sobic005G206601 Sobic004G205100 Sobic004G205100 Sobic003G352300--Sobic004G205100 Sobic003G352300--Sobic010G259600 Sobic003G352300--Sobic002G125700 Sobic009G159400 Sobic009G159400 Sobic003G352300--Sobic009G159400 Sobic003G352300--Sobic001G503100 Sobic006G092500 Sobic006G092500 Sobic003G352300--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic003G352300--Sobic009G183400 Sobic003G352300--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic003G352300--Sobic003G417800 Sobic006G125100--Sobic001G503100 Sobic006G125100--Sobic010G063000 Sobic002G247600 Sobic002G247600 Sobic006G125100--Sobic002G247600 Sobic006G125100--Sobic002G125700 Sobic010G185000 Sobic010G185000 Sobic006G125100--Sobic010G185000 Sobic004G348400 Sobic004G348400 Sobic006G125100--Sobic004G348400 Sobic001G333400 Sobic001G333400 Sobic006G125100--Sobic001G333400 Sobic006G125100--Sobic003G255500 Sobic006G125100--Sobic006G277600 Sobic010G052700--Sobic001G503100 Sobic003G087300 Sobic003G087300 Sobic010G052700--Sobic003G087300 Sobic010G052700--Sobic001G333400 Sobic003G280200 Sobic003G280200 Sobic010G052700--Sobic003G280200 Sobic007G141500 Sobic007G141500 Sobic010G052700--Sobic007G141500 Sobic005G011200 Sobic005G011200 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic010G052700--Sobic002G004900 Sobic010G052700--Sobic002G125700 Sobic004G107700--Sobic003G255200 Sobic003G437200 Sobic003G437200 Sobic004G107700--Sobic003G437200 Sobic004G107700--Sobic002G125700 Sobic004G107700--Sobic003G417800 Sobic004G107700--Sobic001G503100 Sobic002G034800 Sobic002G034800 Sobic004G107700--Sobic002G034800 Sobic009G139400 Sobic009G139400 Sobic004G107700--Sobic009G139400 Sobic004G107700--Sobic003G352300 Sobic004G176600 Sobic004G176600 Sobic004G107700--Sobic004G176600 Sobic003G255200--Sobic004G107700 Sobic003G255200--Sobic002G125700 Sobic008G172600 Sobic008G172600 Sobic003G255200--Sobic008G172600 Sobic004G046200 Sobic004G046200 Sobic003G255200--Sobic004G046200 Sobic003G255200--Sobic010G259600 Sobic001G449600 Sobic001G449600 Sobic003G255200--Sobic001G449600 Sobic003G255200--Sobic007G087200 Sobic003G255200--Sobic001G503100 Sobic003G255200--Sobic002G034800 Sobic001G318500 Sobic001G318500 Sobic002G004900--Sobic001G318500 Sobic002G004900--Sobic008G172600 Sobic002G017800 Sobic002G017800 Sobic002G004900--Sobic002G017800 Sobic002G004900--Sobic003G280200 Sobic002G004900--Sobic001G503100 Sobic002G302500 Sobic002G302500 Sobic002G004900--Sobic002G302500 Sobic009G009600 Sobic009G009600 Sobic002G004900--Sobic009G009600 Sobic002G004900--Sobic001G325400 Sobic002G004900--Sobic005G011200 Sobic003G255500--Sobic001G503100 Sobic003G255500--Sobic003G255200 Sobic006G199800 Sobic006G199800 Sobic003G255500--Sobic006G199800 Sobic003G255500--Sobic001G449600 Sobic006G044100 Sobic006G044100 Sobic003G255500--Sobic006G044100 Sobic009G187200 Sobic009G187200 Sobic003G255500--Sobic009G187200 Sobic003G255500--Sobic004G107700 Sobic003G255500--Sobic004G348400 Sobic001G161500 Sobic001G161500 Sobic003G255500--Sobic001G161500
Octagon: transcription factors


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