Gene annotation
Transcriptome id Sobic.003G352300.3,Sobic.003G352300.1,Sobic.003G352300.2
Synonym CYTOTPI, TPI, Sb03g039480, ATCTIMC
Functional annotation triosephosphate isomerase (PubMedID : 27016024)
triosephosphate isomerase, cytosolic, putative, expressed
UniProt A0A1B6Q6Y7 , A0A1B6Q6Z6 , A0A1B6Q6Y4
Pfam PF00121
Panther DB PTHR21139 PTHR21139:SF6
NCBI CDD KOG1643; Triosephosphate isomerase
KEGG Orthology K01803; TPI, triosephosphate isomerase (TIM)
Gene Ontology GO:0008152; metabolic process GO:0004807triose-phosphate isomerase activity


Orthologs (automatic annotation)
TAIR AT3G55440 : triosephosphate isomerase
RAP-DB (Rice) LOC_Os01g62420.1 : triosephosphate isomerase, cytosolic, putative, expressed
MaizeGDB (Corn) Zm00025a039672 , Zm00025a024071
Brachypodium KQK10520
Barley -
Wheat TraesCS3B02G392000 , TraesCS3A02G359400
Populus -


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cDNA sequences
Sobic.003G352300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
2 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
3 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
4 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
5 Sobic.001G503100 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
6 Sobic.006G092500 expressed protein -
7 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
11 Sobic.003G317100 expressed protein -
12 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
14 Sobic.004G107700 expressed protein -
15 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
16 Sobic.002G034800 - -
17 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
18 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.003G255200 expressed protein -
20 Sobic.009G164600 ZOS1-14 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic003G352300 Sobic003G352300 Sobic004G205100 Sobic004G205100 Sobic003G352300--Sobic004G205100 Sobic010G259600 Sobic010G259600 Sobic003G352300--Sobic010G259600 Sobic002G125700 Sobic002G125700 Sobic003G352300--Sobic002G125700 Sobic009G159400 Sobic009G159400 Sobic003G352300--Sobic009G159400 Sobic001G503100 Sobic001G503100 Sobic003G352300--Sobic001G503100 Sobic006G092500 Sobic006G092500 Sobic003G352300--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic003G352300--Sobic009G183400 Sobic006G099900 Sobic006G099900 Sobic003G352300--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic003G352300--Sobic003G417800 Sobic004G205100--Sobic003G352300 Sobic004G205100--Sobic006G092500 Sobic004G205100--Sobic009G183400 Sobic004G205100--Sobic009G159400 Sobic001G476500 Sobic001G476500 Sobic004G205100--Sobic001G476500 Sobic007G184600 Sobic007G184600 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic004G205100--Sobic006G099900 Sobic004G205100--Sobic003G417800 Sobic010G259600--Sobic009G159400 Sobic010G259600--Sobic003G352300 Sobic009G234100 Sobic009G234100 Sobic010G259600--Sobic009G234100 Sobic010G259600--Sobic002G125700 Sobic007G087200 Sobic007G087200 Sobic010G259600--Sobic007G087200 Sobic009G231000 Sobic009G231000 Sobic010G259600--Sobic009G231000 Sobic001G435000 Sobic001G435000 Sobic010G259600--Sobic001G435000 Sobic003G255200 Sobic003G255200 Sobic010G259600--Sobic003G255200 Sobic002G017800 Sobic002G017800 Sobic010G259600--Sobic002G017800 Sobic002G125700--Sobic003G255200 Sobic002G125700--Sobic001G503100 Sobic002G125700--Sobic003G352300 Sobic002G125700--Sobic010G259600 Sobic001G325400 Sobic001G325400 Sobic002G125700--Sobic001G325400 Sobic002G125700--Sobic007G087200 Sobic004G107700 Sobic004G107700 Sobic002G125700--Sobic004G107700 Sobic002G125700--Sobic009G231000 Sobic010G063000 Sobic010G063000 Sobic002G125700--Sobic010G063000 Sobic001G038900 Sobic001G038900 Sobic009G159400--Sobic001G038900 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic003G345100 Sobic003G345100 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic001G503100--Sobic002G125700 Sobic006G277600 Sobic006G277600 Sobic001G503100--Sobic006G277600 Sobic001G503100--Sobic003G352300 Sobic006G125100 Sobic006G125100 Sobic001G503100--Sobic006G125100 Sobic010G052700 Sobic010G052700 Sobic001G503100--Sobic010G052700 Sobic001G503100--Sobic004G107700 Sobic001G503100--Sobic003G255200 Sobic002G004900 Sobic002G004900 Sobic001G503100--Sobic002G004900 Sobic003G255500 Sobic003G255500 Sobic001G503100--Sobic003G255500 Sobic006G092500--Sobic001G476500 Sobic006G092500--Sobic009G183400 Sobic004G100700 Sobic004G100700 Sobic006G092500--Sobic004G100700 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic005G063100 Sobic005G063100 Sobic006G092500--Sobic005G063100 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic006G092500--Sobic010G259600 Sobic009G183400--Sobic001G476500 Sobic001G119400 Sobic001G119400 Sobic009G183400--Sobic001G119400 Sobic009G183400--Sobic006G092500 Sobic009G183400--Sobic001G038900 Sobic001G097600 Sobic001G097600 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic002G414600 Sobic002G414600 Sobic009G183400--Sobic002G414600 Sobic009G183400--Sobic004G100700 Sobic009G183400--Sobic001G140900 Sobic007G227300 Sobic007G227300 Sobic006G099900--Sobic007G227300 Sobic003G252800 Sobic003G252800 Sobic006G099900--Sobic003G252800 Sobic001G317200 Sobic001G317200 Sobic006G099900--Sobic001G317200 Sobic003G286600 Sobic003G286600 Sobic006G099900--Sobic003G286600 Sobic010G084400 Sobic010G084400 Sobic006G099900--Sobic010G084400 Sobic004G189400 Sobic004G189400 Sobic006G099900--Sobic004G189400 Sobic006G099900--Sobic008G050600 Sobic006G099900--Sobic005G091500 Sobic006G099900--Sobic006G277600 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic003G417800--Sobic001G119400 Sobic003G417800--Sobic004G107700 Sobic003G417800--Sobic006G099900 Sobic003G417800--Sobic003G352300 Sobic009G240600 Sobic009G240600 Sobic003G417800--Sobic009G240600
Octagon: transcription factors


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