Gene annotation
| Transcriptome id | Sobic.003G417800.1 |
|---|---|
| Synonym | Sb03g045150, NF-YB5 |
| Functional annotation | down-regulated TF in developmental senescence (PubMedID : 27586543) histone-like transcription factor and archaeal histone, putative, expressed |
| UniProt | C5XH51 |
| Pfam | PF00808 |
| Panther DB | PTHR11064 PTHR11064:SF42 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G47810 : nuclear factor Y, subunit B5 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g70890.1 : histone-like transcription factor and archaeal histone, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026114 , Zm00025a030028 , Zm00025a039184 , Zm00025a050499 |
| Brachypodium | KQJ95195 , PNT73541 |
| Barley | HORVU1Hr1G090450.11 , HORVU1Hr1G090450.10 , HORVU1Hr1G090450.12 , HORVU3Hr1G098500.1 , HORVU3Hr1G098500.2 , HORVU5Hr1G004870.2 , HORVU5Hr1G004870.3 , HORVU7Hr1G043520.3 , HORVU7Hr1G043520.2 , HORVU7Hr1G043520.1 , HORVU5Hr1G004870.5 , HORVU2Hr1G087460.1 , HORVU5Hr1G004870.1 , HORVU5Hr1G004870.6 , HORVU5Hr1G004870.7 , HORVU1Hr1G090450.9 , HORVU1Hr1G090450.8 , HORVU5Hr1G004870.4 , HORVU1Hr1G090450.1 , HORVU1Hr1G090450.3 , HORVU1Hr1G090450.2 , HORVU1Hr1G090450.5 , HORVU1Hr1G090450.4 , HORVU1Hr1G090450.7 , HORVU1Hr1G090450.6 |
| Wheat | TraesCS7A02G214600 , TraesCS7A02G214900 , TraesCS1A02G411700 , TraesCS1B02G442000 , TraesCS1D02G419500 , TraesCS1D02G419500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G476500 | helix-loop-helix DNA-binding protein, putative, expressed | - |
| 2 | Sobic.003G437200 | sulfotransferase domain containing protein, expressed | - |
| 3 | Sobic.009G183400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed | - |
| 4 | Sobic.003G062600 | limonoid UDP-glucosyltransferase, putative, expressed | - |
| 5 | Sobic.001G119400 | microsomal glutathione S-transferase 3, putative, expressed | K00799: GST, glutathione S-transferase |
| 6 | Sobic.004G107700 | expressed protein | - |
| 7 | Sobic.006G099900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed | - |
| 8 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 9 | Sobic.009G240600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed | - |
| 10 | Sobic.006G092500 | expressed protein | - |
| 11 | Sobic.001G481400 | similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 12 | Sobic.007G227300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 13 | Sobic.004G205100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase |
| 14 | Sobic.006G277600 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 15 | Sobic.007G184600 | 60S ribosomal protein L38, putative, expressed | K02923: RP-L38e, large subunit ribosomal protein L38e |
| 16 | Sobic.001G231700 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 17 | Sobic.002G287100 | flavin-containing monooxygenase family protein, putative, expressed | - |
| 18 | Sobic.001G247600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed | K10046: GDP-D-mannose 3', 5'-epimerase |
| 19 | Sobic.001G500000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 20 | Sobic.004G176600 | no apical meristem protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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