Gene annotation
Transcriptome id Sobic.007G141500.1
Synonym ATCM2, CM2, Sb07g021700
Functional annotation chorismate mutase, chloroplast precursor, putative, expressed
UniProt C5YLL7
Pfam -
Panther DB PTHR21145 PTHR21145:SF2
NCBI CDD KOG0795; Chorismate mutase
KEGG Orthology K01850; chorismate mutase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:0004106chorismate mutase activity


Orthologs (automatic annotation)
TAIR AT5G10870 : chorismate mutase 2
RAP-DB (Rice) LOC_Os08g34290.1 : chorismate mutase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a031159
Brachypodium -
Barley HORVU0Hr1G020780.1 , HORVU0Hr1G020780.5 , HORVU0Hr1G020780.4 , HORVU0Hr1G020780.3 , HORVU0Hr1G020780.2
Wheat TraesCS7B02G149600 , TraesCS7A02G253300 , TraesCS7D02G251900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
2 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
3 Sobic.003G087300 nuclease PA3, putative, expressed -
4 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
6 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
7 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
9 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
10 Sobic.009G077800 expressed protein -
11 Sobic.002G199650 - -
12 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
13 Sobic.009G120000 - -
14 Sobic.001G503100 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
15 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
16 Sobic.001G333400 SCP-like extracellular protein, expressed -
17 Sobic.009G229000 expressed protein -
18 Sobic.003G129000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
20 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G141500 Sobic007G141500 Sobic003G117600 Sobic003G117600 Sobic007G141500--Sobic003G117600 Sobic006G153100 Sobic006G153100 Sobic007G141500--Sobic006G153100 Sobic003G087300 Sobic003G087300 Sobic007G141500--Sobic003G087300 Sobic002G416600 Sobic002G416600 Sobic007G141500--Sobic002G416600 Sobic002G125700 Sobic002G125700 Sobic007G141500--Sobic002G125700 Sobic004G166700 Sobic004G166700 Sobic007G141500--Sobic004G166700 Sobic001G444400 Sobic001G444400 Sobic007G141500--Sobic001G444400 Sobic001G325400 Sobic001G325400 Sobic007G141500--Sobic001G325400 Sobic010G052700 Sobic010G052700 Sobic007G141500--Sobic010G052700 Sobic006G277600 Sobic006G277600 Sobic003G117600--Sobic006G277600 Sobic003G117600--Sobic007G141500 Sobic005G063100 Sobic005G063100 Sobic003G117600--Sobic005G063100 Sobic006G092500 Sobic006G092500 Sobic003G117600--Sobic006G092500 Sobic005G206601 Sobic005G206601 Sobic003G117600--Sobic005G206601 Sobic003G117600--Sobic006G153100 Sobic003G117600--Sobic001G325400 Sobic002G354100 Sobic002G354100 Sobic003G117600--Sobic002G354100 Sobic005G091500 Sobic005G091500 Sobic003G117600--Sobic005G091500 Sobic006G153100--Sobic001G444400 Sobic006G153100--Sobic007G141500 Sobic006G153100--Sobic003G117600 Sobic006G153100--Sobic002G416600 Sobic010G084400 Sobic010G084400 Sobic006G153100--Sobic010G084400 Sobic005G179200 Sobic005G179200 Sobic006G153100--Sobic005G179200 Sobic003G252800 Sobic003G252800 Sobic006G153100--Sobic003G252800 Sobic002G199650 Sobic002G199650 Sobic006G153100--Sobic002G199650 Sobic009G196400 Sobic009G196400 Sobic006G153100--Sobic009G196400 Sobic003G087300--Sobic002G416600 Sobic003G087300--Sobic010G052700 Sobic010G239300 Sobic010G239300 Sobic003G087300--Sobic010G239300 Sobic003G087300--Sobic007G141500 Sobic006G039100 Sobic006G039100 Sobic003G087300--Sobic006G039100 Sobic003G087300--Sobic004G166700 Sobic009G231000 Sobic009G231000 Sobic003G087300--Sobic009G231000 Sobic003G087300--Sobic002G125700 Sobic001G252300 Sobic001G252300 Sobic003G087300--Sobic001G252300 Sobic002G416600--Sobic003G087300 Sobic005G051200 Sobic005G051200 Sobic002G416600--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic002G416600--Sobic001G317200 Sobic001G025300 Sobic001G025300 Sobic002G416600--Sobic001G025300 Sobic001G070800 Sobic001G070800 Sobic002G416600--Sobic001G070800 Sobic002G416600--Sobic004G166700 Sobic008G050600 Sobic008G050600 Sobic002G416600--Sobic008G050600 Sobic002G416600--Sobic001G252300 Sobic002G416600--Sobic010G239300 Sobic003G255200 Sobic003G255200 Sobic002G125700--Sobic003G255200 Sobic001G503100 Sobic001G503100 Sobic002G125700--Sobic001G503100 Sobic003G352300 Sobic003G352300 Sobic002G125700--Sobic003G352300 Sobic010G259600 Sobic010G259600 Sobic002G125700--Sobic010G259600 Sobic002G125700--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic002G125700--Sobic007G087200 Sobic004G107700 Sobic004G107700 Sobic002G125700--Sobic004G107700 Sobic002G125700--Sobic009G231000 Sobic010G063000 Sobic010G063000 Sobic002G125700--Sobic010G063000 Sobic004G166700--Sobic001G252300 Sobic009G229000 Sobic009G229000 Sobic004G166700--Sobic009G229000 Sobic004G166700--Sobic002G416600 Sobic009G234100 Sobic009G234100 Sobic004G166700--Sobic009G234100 Sobic004G166700--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic004G166700--Sobic004G208700 Sobic004G166700--Sobic006G092500 Sobic003G345100 Sobic003G345100 Sobic004G166700--Sobic003G345100 Sobic004G166700--Sobic005G063100 Sobic001G444400--Sobic006G153100 Sobic001G444400--Sobic010G084400 Sobic009G106800 Sobic009G106800 Sobic001G444400--Sobic009G106800 Sobic001G444400--Sobic009G196400 Sobic001G444400--Sobic007G141500 Sobic001G444400--Sobic003G252800 Sobic004G111800 Sobic004G111800 Sobic001G444400--Sobic004G111800 Sobic001G100700 Sobic001G100700 Sobic001G444400--Sobic001G100700 Sobic003G426300 Sobic003G426300 Sobic001G444400--Sobic003G426300 Sobic001G325400--Sobic006G039100 Sobic009G111000 Sobic009G111000 Sobic001G325400--Sobic009G111000 Sobic001G325400--Sobic002G125700 Sobic001G462700 Sobic001G462700 Sobic001G325400--Sobic001G462700 Sobic009G077800 Sobic009G077800 Sobic001G325400--Sobic009G077800 Sobic002G017800 Sobic002G017800 Sobic001G325400--Sobic002G017800 Sobic001G325400--Sobic009G231000 Sobic001G325400--Sobic007G087200 Sobic001G325400--Sobic003G117600 Sobic010G052700--Sobic001G503100 Sobic010G052700--Sobic003G087300 Sobic001G333400 Sobic001G333400 Sobic010G052700--Sobic001G333400 Sobic003G280200 Sobic003G280200 Sobic010G052700--Sobic003G280200 Sobic010G052700--Sobic007G141500 Sobic005G011200 Sobic005G011200 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic010G052700--Sobic002G004900 Sobic010G052700--Sobic002G125700
Octagon: transcription factors


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