Gene annotation
| Transcriptome id | Sobic.007G169900.1,Sobic.007G169900.2 |
|---|---|
| Synonym | Sb07g024230, FAR1 |
| Functional annotation | male sterility protein 2, putative, expressed |
| UniProt | A0A1B6PI85 , A0A1B6PI84 |
| Pfam | PF03015 PF07993 |
| Panther DB | PTHR11011 PTHR11011:SF39 |
| NCBI CDD | KOG1221; Acyl-CoA reductase |
| KEGG Orthology | K13356; alcohol-forming fatty acyl-CoA reductase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G33790 : Jojoba acyl CoA reductase-related male sterility protein,fatty acid reductase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os08g44360.1 : male sterility protein 2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005611 , Zm00025a030564 |
| Brachypodium | KQJ99354 , KQJ95970 |
| Barley | - |
| Wheat | TraesCS7B02G176400 , TraesCS7B02G176400 , TraesCS7B02G176400 , TraesCS7D02G278300 , TraesCS7D02G278300 , TraesCS7A02G278500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G231700 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 2 | Sobic.004G349125 | - | - |
| 3 | Sobic.006G199800 | Orthologous gene to AtMYB58 and AtMYB63(PubMedID : 26712107)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 4 | Sobic.010G067400 | receptor-like protein kinase precursor, putative, expressed | - |
| 5 | Sobic.009G106400 | GCRP10 - Glycine and cysteine rich family protein precursor, expressed | - |
| 6 | Sobic.003G084400 | ZOS1-03 - C2H2 zinc finger protein, expressed | - |
| 7 | Sobic.010G184800 | heme oxygenase 1, putative, expressed | K00510: heme oxygenase 1 |
| 8 | Sobic.001G476500 | helix-loop-helix DNA-binding protein, putative, expressed | - |
| 9 | Sobic.004G046200 | sulfotransferase domain containing protein, expressed | - |
| 10 | Sobic.001G481400 | similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 11 | Sobic.001G416200 | Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed | - |
| 12 | Sobic.001G500000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.002G188900 | cytokinin-O-glucosyltransferase 1, putative, expressed | - |
| 14 | Sobic.001G161500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 15 | Sobic.001G304100 | LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 16 | Sobic.003G214100 | expressed protein | - |
| 17 | Sobic.009G240600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed | - |
| 18 | Sobic.006G277600 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 19 | Sobic.004G310200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@receptor-like protein kinase like protein, putative, expressed | - |
| 20 | Sobic.001G302600 | LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
Gene co-expression network
Octagon: transcription factors
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