Gene annotation
Transcriptome id Sobic.001G161500.1
Synonym SbIAA3, SHY2, Sb01g014120, auxin/indole-3-acetic acid (Aux/IAA), IAA3
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5WS52
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF25
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04240 : AUX/IAA transcriptional regulator family protein
RAP-DB (Rice) LOC_Os03g43410.1 : OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a004598 , Zm00025a025292 , Zm00025a008579 , Zm00025a007349 , Zm00025a016565 , Zm00025a045194 , Zm00025a017284
Brachypodium KQK12696 , KQK14080 , KQK20568
Barley HORVU5Hr1G106350.4 , HORVU5Hr1G106350.2 , HORVU5Hr1G106350.3 , HORVU5Hr1G106350.1 , HORVU5Hr1G093640.4 , HORVU5Hr1G093640.1 , HORVU5Hr1G093640.3 , HORVU5Hr1G093640.2 , HORVU5Hr1G014290.2 , HORVU5Hr1G014290.1
Wheat TraesCS5B02G446100 , TraesCS5D02G449400 , TraesCS5B02G058800 , TraesCS5B02G381800 , TraesCS5D02G388200 , TraesCS5D02G069200 , TraesCS5A02G058700 , TraesCS5A02G378200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G416200 Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed -
2 Sobic.004G349125 - -
3 Sobic.001G302600 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
5 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
7 Sobic.009G035300 expressed protein -
8 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
9 Sobic.006G197100 DNA binding protein, putative, expressed -
10 Sobic.010G063000 - -
11 Sobic.003G255500 expressed protein -
12 Sobic.007G169900 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
13 Sobic.001G063200 VQ domain containing protein, putative, expressed -
14 Sobic.004G227800 CBS domain-containing protein, putative, expressed -
15 Sobic.003G360600 cytochrome P450, putative, expressed K15401: long-chain fatty acid omega-monooxygenase
16 Sobic.001G238400 expansin precursor, putative, expressed -
17 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
18 Sobic.001G237900 expansin precursor, putative, expressed -
19 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.006G125100 ubiquitin family protein, putative, expressed -


Gene co-expression network
sample Sobic001G161500 Sobic001G161500 Sobic001G416200 Sobic001G416200 Sobic001G161500--Sobic001G416200 Sobic004G349125 Sobic004G349125 Sobic001G161500--Sobic004G349125 Sobic001G302600 Sobic001G302600 Sobic001G161500--Sobic001G302600 Sobic004G318700 Sobic004G318700 Sobic001G161500--Sobic004G318700 Sobic001G304100 Sobic001G304100 Sobic001G161500--Sobic001G304100 Sobic004G042000 Sobic004G042000 Sobic001G161500--Sobic004G042000 Sobic009G035300 Sobic009G035300 Sobic001G161500--Sobic009G035300 Sobic002G213600 Sobic002G213600 Sobic001G161500--Sobic002G213600 Sobic006G197100 Sobic006G197100 Sobic001G161500--Sobic006G197100 Sobic001G416200--Sobic004G349125 Sobic001G416200--Sobic001G302600 Sobic001G416200--Sobic001G161500 Sobic001G416200--Sobic006G197100 Sobic001G416200--Sobic004G042000 Sobic001G416200--Sobic004G318700 Sobic004G202400 Sobic004G202400 Sobic001G416200--Sobic004G202400 Sobic002G003800 Sobic002G003800 Sobic001G416200--Sobic002G003800 Sobic001G416200--Sobic001G304100 Sobic004G349125--Sobic001G416200 Sobic004G349125--Sobic006G197100 Sobic004G349125--Sobic001G302600 Sobic004G349125--Sobic001G161500 Sobic004G349125--Sobic004G042000 Sobic003G228600 Sobic003G228600 Sobic004G349125--Sobic003G228600 Sobic004G349125--Sobic002G003800 Sobic004G349125--Sobic004G202400 Sobic003G311800 Sobic003G311800 Sobic004G349125--Sobic003G311800 Sobic001G302600--Sobic001G416200 Sobic001G302600--Sobic001G304100 Sobic001G302600--Sobic004G349125 Sobic001G302600--Sobic002G003800 Sobic001G302600--Sobic001G161500 Sobic001G302600--Sobic004G042000 Sobic001G304201 Sobic001G304201 Sobic001G302600--Sobic001G304201 Sobic004G292900 Sobic004G292900 Sobic001G302600--Sobic004G292900 Sobic001G302600--Sobic006G197100 Sobic004G318700--Sobic001G416200 Sobic001G238400 Sobic001G238400 Sobic004G318700--Sobic001G238400 Sobic004G318700--Sobic001G304100 Sobic004G318700--Sobic001G161500 Sobic004G318700--Sobic002G213600 Sobic009G188000 Sobic009G188000 Sobic004G318700--Sobic009G188000 Sobic001G237900 Sobic001G237900 Sobic004G318700--Sobic001G237900 Sobic004G318700--Sobic004G349125 Sobic004G318700--Sobic004G202400 Sobic001G304100--Sobic009G188000 Sobic001G304100--Sobic001G238400 Sobic001G304100--Sobic001G302600 Sobic001G304100--Sobic002G213600 Sobic003G084400 Sobic003G084400 Sobic001G304100--Sobic003G084400 Sobic001G313600 Sobic001G313600 Sobic001G304100--Sobic001G313600 Sobic005G107900 Sobic005G107900 Sobic001G304100--Sobic005G107900 Sobic003G417200 Sobic003G417200 Sobic001G304100--Sobic003G417200 Sobic006G234800 Sobic006G234800 Sobic001G304100--Sobic006G234800 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G042000--Sobic004G349125 Sobic004G042000--Sobic001G416200 Sobic004G042000--Sobic002G213600 Sobic004G042000--Sobic001G302600 Sobic004G042000--Sobic003G311800 Sobic004G042000--Sobic001G304201 Sobic001G264000 Sobic001G264000 Sobic004G042000--Sobic001G264000 Sobic009G035300--Sobic001G264000 Sobic009G035300--Sobic004G042000 Sobic009G035300--Sobic001G416200 Sobic009G035300--Sobic001G161500 Sobic009G035300--Sobic004G349125 Sobic009G035300--Sobic001G302600 Sobic009G035300--Sobic006G197100 Sobic009G035300--Sobic001G304201 Sobic009G035300--Sobic002G003800 Sobic002G213600--Sobic001G304100 Sobic002G213600--Sobic004G042000 Sobic003G016100 Sobic003G016100 Sobic002G213600--Sobic003G016100 Sobic003G319500 Sobic003G319500 Sobic002G213600--Sobic003G319500 Sobic003G053300 Sobic003G053300 Sobic002G213600--Sobic003G053300 Sobic002G213600--Sobic002G003800 Sobic002G213600--Sobic004G318700 Sobic010G063000 Sobic010G063000 Sobic002G213600--Sobic010G063000 Sobic002G213600--Sobic001G304201 Sobic006G197100--Sobic002G003800 Sobic006G197100--Sobic004G042000 Sobic006G197100--Sobic004G349125 Sobic006G197100--Sobic001G416200 Sobic006G197100--Sobic004G202400 Sobic006G197100--Sobic001G264000 Sobic006G197100--Sobic003G311800 Sobic002G042200 Sobic002G042200 Sobic006G197100--Sobic002G042200 Sobic003G368600 Sobic003G368600 Sobic006G197100--Sobic003G368600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.