Gene annotation
Transcriptome id Sobic.001G238400.1
Synonym ATEXPA11, ATHEXPALPHA1.14, ATEXP11, EXP11, EXPA11, Sb01g021090
Functional annotation expansin precursor, putative, expressed
UniProt C5X0I4
Pfam PF03330 PF01357
Panther DB PTHR31867 PTHR31867:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20190 : expansin 11
RAP-DB (Rice) LOC_Os03g31480.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006815 , Zm00025a006817 , Zm00025a006811 , Zm00025a006813 , Zm00025a040299 , Zm00025a040297 , Zm00025a019850 , Zm00025a019851 , Zm00025a019852 , Zm00025a006809 , Zm00025a006808 , Zm00025a019849 , Zm00025a040300 , Zm00025a053441
Brachypodium KQJ96857 , KQJ96854
Barley HORVU4Hr1G072410.1 , HORVU4Hr1G072400.1 , HORVU7Hr1G092600.1 , HORVU7Hr1G092600.2 , HORVU7Hr1G092600.3 , HORVU7Hr1G092600.4 , HORVU7Hr1G092600.5 , HORVU7Hr1G092600.6 , HORVU7Hr1G092600.7
Wheat TraesCS4B02G271200 , TraesCS4B02G271100 , TraesCS1B02G156700 , TraesCS7D02G387400 , TraesCS7D02G387400 , TraesCS4D02G270400 , TraesCS4A02G034300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.001G237900 expansin precursor, putative, expressed -
3 Sobic.003G007600 expressed protein -
4 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
5 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
6 Sobic.003G299300 expressed protein -
7 Sobic.004G292900 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.006G234800 expressed protein -
9 Sobic.006G132900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
10 Sobic.005G213600 Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed -
11 Sobic.010G043900 expressed protein -
12 Sobic.001G313600 heavy metal-associated domain containing protein, expressed -
13 Sobic.008G009400 - -
14 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
15 Sobic.001G416200 Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed -
16 Sobic.002G425000 VQ domain containing protein, putative, expressed -
17 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
18 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
20 Sobic.005G073000 stress responsive protein, putative, expressed -


Gene co-expression network
sample Sobic001G238400 Sobic001G238400 Sobic001G304100 Sobic001G304100 Sobic001G238400--Sobic001G304100 Sobic001G237900 Sobic001G237900 Sobic001G238400--Sobic001G237900 Sobic003G007600 Sobic003G007600 Sobic001G238400--Sobic003G007600 Sobic009G188000 Sobic009G188000 Sobic001G238400--Sobic009G188000 Sobic004G318700 Sobic004G318700 Sobic001G238400--Sobic004G318700 Sobic003G299300 Sobic003G299300 Sobic001G238400--Sobic003G299300 Sobic004G292900 Sobic004G292900 Sobic001G238400--Sobic004G292900 Sobic006G234800 Sobic006G234800 Sobic001G238400--Sobic006G234800 Sobic006G132900 Sobic006G132900 Sobic001G238400--Sobic006G132900 Sobic001G304100--Sobic009G188000 Sobic001G304100--Sobic001G238400 Sobic001G302600 Sobic001G302600 Sobic001G304100--Sobic001G302600 Sobic002G213600 Sobic002G213600 Sobic001G304100--Sobic002G213600 Sobic003G084400 Sobic003G084400 Sobic001G304100--Sobic003G084400 Sobic001G313600 Sobic001G313600 Sobic001G304100--Sobic001G313600 Sobic005G107900 Sobic005G107900 Sobic001G304100--Sobic005G107900 Sobic003G417200 Sobic003G417200 Sobic001G304100--Sobic003G417200 Sobic001G304100--Sobic006G234800 Sobic001G237900--Sobic001G238400 Sobic010G158500 Sobic010G158500 Sobic001G237900--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic001G237900--Sobic003G053300 Sobic006G158400 Sobic006G158400 Sobic001G237900--Sobic006G158400 Sobic002G425000 Sobic002G425000 Sobic001G237900--Sobic002G425000 Sobic004G202400 Sobic004G202400 Sobic001G237900--Sobic004G202400 Sobic001G237900--Sobic001G304100 Sobic010G063000 Sobic010G063000 Sobic001G237900--Sobic010G063000 Sobic001G237900--Sobic002G213600 Sobic003G007600--Sobic003G299300 Sobic003G007600--Sobic001G238400 Sobic010G270500 Sobic010G270500 Sobic003G007600--Sobic010G270500 Sobic006G103000 Sobic006G103000 Sobic003G007600--Sobic006G103000 Sobic003G007600--Sobic001G304100 Sobic002G017800 Sobic002G017800 Sobic003G007600--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic003G007600--Sobic009G111000 Sobic001G318500 Sobic001G318500 Sobic003G007600--Sobic001G318500 Sobic001G402200 Sobic001G402200 Sobic003G007600--Sobic001G402200 Sobic009G188000--Sobic001G313600 Sobic009G188000--Sobic001G304100 Sobic009G188000--Sobic005G107900 Sobic001G502400 Sobic001G502400 Sobic009G188000--Sobic001G502400 Sobic009G188000--Sobic001G238400 Sobic006G235100 Sobic006G235100 Sobic009G188000--Sobic006G235100 Sobic009G188000--Sobic003G084400 Sobic008G009400 Sobic008G009400 Sobic009G188000--Sobic008G009400 Sobic001G295200 Sobic001G295200 Sobic009G188000--Sobic001G295200 Sobic001G416200 Sobic001G416200 Sobic004G318700--Sobic001G416200 Sobic004G318700--Sobic001G238400 Sobic004G318700--Sobic001G304100 Sobic001G161500 Sobic001G161500 Sobic004G318700--Sobic001G161500 Sobic004G318700--Sobic002G213600 Sobic004G318700--Sobic009G188000 Sobic004G318700--Sobic001G237900 Sobic004G349125 Sobic004G349125 Sobic004G318700--Sobic004G349125 Sobic004G318700--Sobic004G202400 Sobic003G299300--Sobic003G007600 Sobic003G299300--Sobic008G009400 Sobic001G330300 Sobic001G330300 Sobic003G299300--Sobic001G330300 Sobic003G299300--Sobic010G270500 Sobic003G299300--Sobic009G188000 Sobic003G299300--Sobic001G238400 Sobic003G299300--Sobic001G304100 Sobic004G295100 Sobic004G295100 Sobic003G299300--Sobic004G295100 Sobic003G299300--Sobic006G103000 Sobic006G172550 Sobic006G172550 Sobic004G292900--Sobic006G172550 Sobic004G292900--Sobic001G302600 Sobic004G292900--Sobic001G304100 Sobic004G292900--Sobic001G238400 Sobic004G292900--Sobic006G234800 Sobic006G198700 Sobic006G198700 Sobic004G292900--Sobic006G198700 Sobic004G292900--Sobic001G416200 Sobic004G292900--Sobic009G188000 Sobic002G354200 Sobic002G354200 Sobic004G292900--Sobic002G354200 Sobic001G435000 Sobic001G435000 Sobic006G234800--Sobic001G435000 Sobic001G231700 Sobic001G231700 Sobic006G234800--Sobic001G231700 Sobic004G229800 Sobic004G229800 Sobic006G234800--Sobic004G229800 Sobic006G234800--Sobic001G304100 Sobic006G234800--Sobic006G132900 Sobic006G234800--Sobic001G402200 Sobic001G367600 Sobic001G367600 Sobic006G234800--Sobic001G367600 Sobic007G017500 Sobic007G017500 Sobic006G234800--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic006G234800--Sobic006G075400 Sobic006G132900--Sobic001G502400 Sobic006G132900--Sobic006G234800 Sobic006G132900--Sobic005G107900 Sobic006G132900--Sobic001G313600 Sobic002G188900 Sobic002G188900 Sobic006G132900--Sobic002G188900 Sobic006G132900--Sobic001G304100 Sobic006G132900--Sobic001G435000 Sobic006G132900--Sobic004G229800 Sobic006G132900--Sobic001G238400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.