Gene annotation
Transcriptome id Sobic.006G158400.1
Synonym Sb06g023540
Functional annotation short-chain dehydrogenase/reductase, putative, expressed
UniProt C5YCW3
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF358
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G61220 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g44980.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a056579 , Zm00025a010449
Brachypodium KQJ83750 , KQJ83749
Barley HORVU2Hr1G091430.9 , HORVU2Hr1G091430.8 , HORVU2Hr1G091430.3 , HORVU2Hr1G091430.2 , HORVU2Hr1G091430.1 , HORVU2Hr1G091430.7 , HORVU2Hr1G091430.6 , HORVU2Hr1G091430.4
Wheat TraesCS2D02G367400 , TraesCS2D02G367400 , TraesCS2B02G388200 , TraesCS2B02G388200
Populus -


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cDNA sequences
Sobic.006G158400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G127933 - -
2 Sobic.008G027600 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.001G237900 expansin precursor, putative, expressed -
4 Sobic.010G158500 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.007G204700 expressed protein -
6 Sobic.003G007600 expressed protein -
7 Sobic.010G043900 expressed protein -
8 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.003G299300 expressed protein -
10 Sobic.001G238400 expansin precursor, putative, expressed -
11 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.001G330300 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
13 Sobic.003G264600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
15 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
17 Sobic.002G017800 expressed protein -
18 Sobic.010G082600 EF hand family protein, putative, expressed -
19 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
20 Sobic.003G026400 aquaporin protein, putative, expressed K09874: aquaporin NIP


Gene co-expression network
sample Sobic006G158400 Sobic006G158400 Sobic008G127933 Sobic008G127933 Sobic006G158400--Sobic008G127933 Sobic008G027600 Sobic008G027600 Sobic006G158400--Sobic008G027600 Sobic001G237900 Sobic001G237900 Sobic006G158400--Sobic001G237900 Sobic010G158500 Sobic010G158500 Sobic006G158400--Sobic010G158500 Sobic007G204700 Sobic007G204700 Sobic006G158400--Sobic007G204700 Sobic003G007600 Sobic003G007600 Sobic006G158400--Sobic003G007600 Sobic010G043900 Sobic010G043900 Sobic006G158400--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic006G158400--Sobic001G318500 Sobic003G299300 Sobic003G299300 Sobic006G158400--Sobic003G299300 Sobic008G127933--Sobic006G158400 Sobic002G425000 Sobic002G425000 Sobic008G127933--Sobic002G425000 Sobic008G127933--Sobic001G237900 Sobic008G127933--Sobic007G204700 Sobic008G128066 Sobic008G128066 Sobic008G127933--Sobic008G128066 Sobic010G270700 Sobic010G270700 Sobic008G127933--Sobic010G270700 Sobic008G009400 Sobic008G009400 Sobic008G127933--Sobic008G009400 Sobic001G238400 Sobic001G238400 Sobic008G127933--Sobic001G238400 SobicK026900 SobicK026900 Sobic008G127933--SobicK026900 Sobic008G027600--Sobic006G158400 Sobic002G369400 Sobic002G369400 Sobic008G027600--Sobic002G369400 Sobic008G158100 Sobic008G158100 Sobic008G027600--Sobic008G158100 Sobic008G027600--Sobic010G043900 Sobic008G027600--Sobic001G318500 Sobic001G114900 Sobic001G114900 Sobic008G027600--Sobic001G114900 Sobic008G027600--Sobic003G007600 Sobic009G145500 Sobic009G145500 Sobic008G027600--Sobic009G145500 Sobic002G243000 Sobic002G243000 Sobic008G027600--Sobic002G243000 Sobic001G237900--Sobic001G238400 Sobic001G237900--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic001G237900--Sobic003G053300 Sobic001G237900--Sobic006G158400 Sobic001G237900--Sobic002G425000 Sobic004G202400 Sobic004G202400 Sobic001G237900--Sobic004G202400 Sobic001G304100 Sobic001G304100 Sobic001G237900--Sobic001G304100 Sobic010G063000 Sobic010G063000 Sobic001G237900--Sobic010G063000 Sobic002G213600 Sobic002G213600 Sobic001G237900--Sobic002G213600 Sobic010G158500--Sobic001G237900 Sobic010G158500--Sobic006G158400 Sobic010G158500--Sobic007G204700 Sobic002G124500 Sobic002G124500 Sobic010G158500--Sobic002G124500 Sobic010G158500--SobicK026900 Sobic010G158500--Sobic010G063000 Sobic010G158500--Sobic004G202400 Sobic010G158500--Sobic008G127933 Sobic005G066100 Sobic005G066100 Sobic010G158500--Sobic005G066100 Sobic007G204700--Sobic006G158400 Sobic001G462700 Sobic001G462700 Sobic007G204700--Sobic001G462700 Sobic007G204700--Sobic010G158500 Sobic007G204700--Sobic008G127933 Sobic007G204700--Sobic001G237900 Sobic005G215400 Sobic005G215400 Sobic007G204700--Sobic005G215400 Sobic007G204700--Sobic004G202400 Sobic008G128200 Sobic008G128200 Sobic007G204700--Sobic008G128200 Sobic004G348800 Sobic004G348800 Sobic007G204700--Sobic004G348800 Sobic003G007600--Sobic003G299300 Sobic003G007600--Sobic001G238400 Sobic010G270500 Sobic010G270500 Sobic003G007600--Sobic010G270500 Sobic006G103000 Sobic006G103000 Sobic003G007600--Sobic006G103000 Sobic003G007600--Sobic001G304100 Sobic002G017800 Sobic002G017800 Sobic003G007600--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic003G007600--Sobic009G111000 Sobic003G007600--Sobic001G318500 Sobic001G402200 Sobic001G402200 Sobic003G007600--Sobic001G402200 Sobic002G338500 Sobic002G338500 Sobic010G043900--Sobic002G338500 Sobic010G043900--Sobic008G027600 Sobic002G422300 Sobic002G422300 Sobic010G043900--Sobic002G422300 Sobic005G213600 Sobic005G213600 Sobic010G043900--Sobic005G213600 Sobic010G043900--Sobic006G158400 Sobic010G043900--Sobic001G238400 Sobic003G026400 Sobic003G026400 Sobic010G043900--Sobic003G026400 Sobic003G043600 Sobic003G043600 Sobic010G043900--Sobic003G043600 Sobic005G213500 Sobic005G213500 Sobic010G043900--Sobic005G213500 Sobic002G004900 Sobic002G004900 Sobic001G318500--Sobic002G004900 Sobic001G318500--Sobic002G017800 Sobic001G318500--Sobic009G111000 Sobic002G302500 Sobic002G302500 Sobic001G318500--Sobic002G302500 Sobic002G055700 Sobic002G055700 Sobic001G318500--Sobic002G055700 Sobic004G203700 Sobic004G203700 Sobic001G318500--Sobic004G203700 Sobic004G148200 Sobic004G148200 Sobic001G318500--Sobic004G148200 Sobic001G367600 Sobic001G367600 Sobic001G318500--Sobic001G367600 Sobic001G318500--Sobic008G027600 Sobic003G299300--Sobic003G007600 Sobic003G299300--Sobic008G009400 Sobic001G330300 Sobic001G330300 Sobic003G299300--Sobic001G330300 Sobic003G299300--Sobic010G270500 Sobic009G188000 Sobic009G188000 Sobic003G299300--Sobic009G188000 Sobic003G299300--Sobic001G238400 Sobic003G299300--Sobic001G304100 Sobic004G295100 Sobic004G295100 Sobic003G299300--Sobic004G295100 Sobic003G299300--Sobic006G103000
Octagon: transcription factors


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