Gene annotation
| Transcriptome id | Sobic.010G082600.1 |
|---|---|
| Synonym | Sb10g007165 |
| Functional annotation | EF hand family protein, putative, expressed |
| UniProt | A0A194YI10 |
| Pfam | PF13202 |
| Panther DB | PTHR10891 PTHR10891:SF634 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005509; calcium ion binding |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os06g11030.1 : EF hand family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a042518 , Zm00025a049574 |
| Brachypodium | - |
| Barley | HORVU6Hr1G078670.1 , HORVU6Hr1G078670.2 , HORVU6Hr1G078670.3 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G141100 | Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed | K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase |
| 2 | Sobic.006G008000 | O-methyltransferase, putative, expressed | - |
| 3 | Sobic.006G235100 | expressed protein | - |
| 4 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 5 | Sobic.009G145700 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.003G426600 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 7 | Sobic.002G189100 | beta-glucan-binding protein 4, putative, expressed | K01180: endo-1,3(4)-beta-glucanase |
| 8 | Sobic.002G012500 | DUF538 domain containing protein, putative, expressed | - |
| 9 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 10 | Sobic.006G007900 | SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed | - |
| 11 | Sobic.001G502400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed | - |
| 12 | Sobic.008G066200 | expressed protein | - |
| 13 | Sobic.008G066401 | - | - |
| 14 | Sobic.001G247300 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 15 | Sobic.005G086600 | O-methyltransferase, putative, expressed | - |
| 16 | Sobic.009G145600 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 17 | Sobic.001G259900 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 18 | Sobic.005G107900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed | - |
| 19 | Sobic.003G432700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed | - |
| 20 | Sobic.001G313600 | heavy metal-associated domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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