Gene annotation
| Transcriptome id | Sobic.001G247300.1 |
|---|---|
| Synonym | Sb01g021870, |
| Functional annotation | "Ca ATPase, IIB type" (PubMedID : 22196357) SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) calcium-transporting ATPase, plasma membrane-type, putative, expressed |
| UniProt | C5X1K4 |
| Pfam | PF00690 PF00702 PF00689 PF00122 |
| Panther DB | PTHR24093 PTHR24093:SF328 |
| NCBI CDD | - |
| KEGG Orthology | K01537; P-type Ca2+ transporter type 2C |
| Gene Ontology | GO:0000166; nucleotide binding |
Orthologs (automatic annotation)
| TAIR | AT3G22910 : ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os10g28240.1 : calcium-transporting ATPase, plasma membrane-type, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026087 , Zm00025a039163 , Zm00025a017775 |
| Brachypodium | KQJ96740 , KQJ88101 |
| Barley | HORVU1Hr1G076950.1 , HORVU1Hr1G076950.2 , HORVU1Hr1G076950.3 , HORVU1Hr1G076950.4 , HORVU3Hr1G102890.3 , HORVU3Hr1G102890.2 , HORVU3Hr1G102890.1 , HORVU3Hr1G102890.5 , HORVU3Hr1G102890.4 , HORVU0Hr1G016220.1 , HORVU0Hr1G016220.2 |
| Wheat | TraesCS3B02G519000 , TraesCS3D02G470100 , TraesCS3A02G475500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G196800 | membrane protein, putative, expressed | - |
| 2 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 3 | Sobic.003G092900 | expressed protein | - |
| 4 | Sobic.004G237800 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 5 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 6 | Sobic.006G183400 | OsRhmbd11 - Putative Rhomboid homologue, expressed | - |
| 7 | Sobic.002G338500 | sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed | - |
| 8 | Sobic.007G074000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- | - |
| 9 | Sobic.003G382600 | ARGOS, putative, expressed | - |
| 10 | Sobic.003G050300 | peroxidases (PubMedID : 28944535)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 11 | Sobic.001G267600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed | - |
| 12 | Sobic.003G093000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.010G259300 | transferase family protein, putative, expressed | - |
| 14 | Sobic.002G356101 | - | - |
| 15 | Sobic.010G082600 | EF hand family protein, putative, expressed | - |
| 16 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 17 | Sobic.002G189100 | beta-glucan-binding protein 4, putative, expressed | K01180: endo-1,3(4)-beta-glucanase |
| 18 | Sobic.004G222500 | gibberellin 2-beta-dioxygenase 7, putative, expressed | K04125: gibberellin 2beta-dioxygenase |
| 19 | Sobic.008G139600 | lectin-like receptor kinase, putative, expressed | - |
| 20 | Sobic.009G145500 | peroxidase precursor, putative, expressed | K00430: peroxidase |
Gene co-expression network
Octagon: transcription factors
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